LCOV - code coverage report
Current view: | top level - dynamics/se/dycore - prim_advance_mod.F90 (source / functions) |  |  | Hit | Total | Coverage
Test: | coverage.info |  | Lines: | 547 | 763 | 71.7 %
Date: | 2024-12-17 17:57:11 |  | Functions: | 9 | 10 | 90.0 %

              Line data    Source code
           1             : module prim_advance_mod
           2             :   use shr_kind_mod,   only: r8=>shr_kind_r8
           3             :   use edgetype_mod,   only: EdgeBuffer_t
           4             :   use perf_mod,       only: t_startf, t_stopf, t_adj_detailf !, t_barrierf _EXTERNAL
           5             :   use cam_abortutils, only: endrun
           6             :   use parallel_mod,   only: parallel_t, HME_BNDRY_P2P!,HME_BNDRY_A2A
           7             :   use thread_mod ,    only: horz_num_threads, vert_num_threads, omp_set_nested
           8             :
           9             :   implicit none
          10             :   private
          11             :   save
          12             :
          13             :   public :: prim_advance_exp, prim_advance_init, applyCAMforcing, tot_energy_dyn, compute_omega
          14             :
          15             :   type (EdgeBuffer_t) :: edge3,edgeOmega,edgeSponge
          16             :   real (kind=r8), allocatable :: ur_weights(:)
          17             : contains
          18             :
          19        1536 :   subroutine prim_advance_init(par, elem)
          20             :     use edge_mod,       only: initEdgeBuffer
          21             :     use element_mod,    only: element_t
          22             :     use dimensions_mod, only: nlev,ksponge_end
          23             :     use control_mod,    only: qsplit
          24             :
          25             :     type (parallel_t)                       :: par
          26             :     type (element_t), target, intent(inout) :: elem(:)
          27             :     integer                                 :: i
          28             :
          29        1536 :     call initEdgeBuffer(par,edge3   ,elem,4*nlev   ,bndry_type=HME_BNDRY_P2P, nthreads=horz_num_threads)
          30        1536 :     if (ksponge_end>0) then
          31        1536 :        call initEdgeBuffer(par,edgeSponge,elem,4*ksponge_end,bndry_type=HME_BNDRY_P2P, nthreads=horz_num_threads)
          32             :     end if
          33        1536 :     call initEdgeBuffer(par,edgeOmega ,elem,nlev         ,bndry_type=HME_BNDRY_P2P, nthreads=horz_num_threads)
          34             :
          35        4608 :     if(.not. allocated(ur_weights)) allocate(ur_weights(qsplit))
          36        3072 :     ur_weights(:)=0.0_r8
          37             :
          38        1536 :     if(mod(qsplit,2).NE.0)then
          39        1536 :       ur_weights(1)=1.0_r8/qsplit
          40        1536 :       do i=3,qsplit,2
          41        1536 :         ur_weights(i)=2.0_r8/qsplit
          42             :       enddo
          43             :     else
          44           0 :       do i=2,qsplit,2
          45           0 :         ur_weights(i)=2.0_r8/qsplit
          46             :       enddo
          47             :     endif
          48        1536 :   end subroutine prim_advance_init
          49             :
          50     2216448 :   subroutine prim_advance_exp(elem, fvm, deriv, hvcoord, hybrid,dt, tl,  nets, nete)
          51        1536 :     use control_mod,       only: tstep_type, qsplit
          52             :     use derivative_mod,    only: derivative_t
          53             :     use dimensions_mod,    only: np, nlev
          54             :     use element_mod,       only: element_t
          55             :     use hybvcoord_mod,     only: hvcoord_t
          56             :     use hybrid_mod,        only: hybrid_t
          57             :     use se_dyn_time_mod,   only: TimeLevel_t,  timelevel_qdp, tevolve
          58             :     use fvm_control_volume_mod, only: fvm_struct
          59             :     use cam_thermo,        only: get_kappa_dry
          60             :     use air_composition,   only: thermodynamic_active_species_num
          61             :     use air_composition,   only: thermodynamic_active_species_idx_dycore, get_cp
          62             :     use physconst,         only: cpair
          63             :     implicit none
          64             :
          65             :     type (element_t), intent(inout), target   :: elem(:)
          66             :     type(fvm_struct)     , intent(inout) :: fvm(:)
          67             :     type (derivative_t)  , intent(in) :: deriv
          68             :     type (hvcoord_t)                  :: hvcoord
          69             :     type (hybrid_t)      , intent(in) :: hybrid
          70             :     real (kind=r8), intent(in) :: dt
          71             :     type (TimeLevel_t)   , intent(in) :: tl
          72             :     integer              , intent(in) :: nets
          73             :     integer              , intent(in) :: nete
          74             :
          75             :     ! Local
          76             :     real (kind=r8) :: dt_vis, eta_ave_w
          77             :     integer        :: ie,nm1,n0,np1,k,qn0,m_cnst, nq
          78     4432896 :     real (kind=r8) :: inv_cp_full(np,np,nlev,nets:nete)
          79     4432896 :     real (kind=r8) :: qwater(np,np,nlev,thermodynamic_active_species_num,nets:nete)
          80     4432896 :     integer        :: qidx(thermodynamic_active_species_num)
          81     4432896 :     real (kind=r8) :: kappa(np,np,nlev,nets:nete)
          82             :
          83     2216448 :     nm1   = tl%nm1
          84     2216448 :     n0    = tl%n0
          85     2216448 :     np1   = tl%np1
          86             :
          87     2216448 :     call TimeLevel_Qdp(tl, qsplit, qn0)  ! compute current Qdp() timelevel
          88             :     !
          89             :     !   tstep_type=1  RK2-SSP 3 stage (as used by tracers)           CFL=.58
          90             :     !                    optimal in terms of SSP CFL, but not        CFLSSP=2
          91             :     !                    optimal in terms of CFL
          92             :     !                    typically requires qsplit=3
          93             :     !                    but if windspeed > 340m/s, could use this
          94             :     !                    with qsplit=1
          95             :     !   tstep_type=2  classic RK3                                    CFL=1.73 (sqrt(3))
          96             :     !
          97             :     !   tstep_type=3  Kinnmark&Gray RK4 4 stage                      CFL=sqrt(8)=2.8
          98             :     !                 should we replace by standard RK4 (CFL=sqrt(8))?
          99             :     !                 (K&G 1st order method has CFL=3)
         100             :     !   tstep_type=4  Kinnmark&Gray RK3 5 stage 3rd order            CFL=3.87  (sqrt(15))
         101             :     !                 From Paul Ullrich.  3rd order for nonlinear terms also
         102             :     !                 K&G method is only 3rd order for linear
         103             :     !                 optimal: for windspeeds ~120m/s,gravity: 340m/2
         104             :     !                 run with qsplit=1
         105             :     !                 (K&G 2nd order method has CFL=4. tiny CFL improvement not worth 2nd order)
         106             :     !
         107             :
         108     2216448 :     call omp_set_nested(.true.)
         109             :
         110             :     ! default weights for computing mean dynamics fluxes
         111     2216448 :     eta_ave_w = 1_r8/qsplit
         112             :
         113             :     ! ==================================
         114             :     ! Take timestep
         115             :     ! ==================================
         116     2216448 :     call t_startf('prim_adv_prep')
         117    15515136 :     do nq=1,thermodynamic_active_species_num
         118    15515136 :       qidx(nq) = nq
         119             :     end do
         120    17800848 :     do ie=nets,nete
         121   111307248 :       do nq=1,thermodynamic_active_species_num
         122    93506400 :         m_cnst = thermodynamic_active_species_idx_dycore(nq)
         123             :         !
         124             :         ! make sure Q is updated
         125             :         !
         126 >18272*10^7 :         qwater(:,:,:,nq,ie) = elem(ie)%state%Qdp(:,:,:,m_cnst,qn0)/elem(ie)%state%dp3d(:,:,:,n0)
         127             :       end do
         128             :     end do
         129             :     !
         130             :     ! compute Cp and kappa=Rdry/cpdry here and not in RK-stages since Q stays constant
         131             :     !
         132    17800848 :     do ie=nets,nete
         133             :       call get_cp(qwater(:,:,:,:,ie),.true.,&
         134    17800848 :            inv_cp_full(:,:,:,ie), active_species_idx_dycore=qidx)
         135             :     end do
         136    17800848 :     do ie=nets,nete
         137    17800848 :       call get_kappa_dry(qwater(:,:,:,:,ie), qidx, kappa(:,:,:,ie))
         138             :     end do
         139     2216448 :     call t_stopf('prim_adv_prep')
         140             :
         141     2216448 :     dt_vis = dt
         142             :
         143     2216448 :     if (tstep_type==1) then
         144             :       ! RK2-SSP 3 stage.  matches tracer scheme. optimal SSP CFL, but
         145             :       ! not optimal for regular CFL
         146             :       ! u1 = u0 + dt/2 RHS(u0)
         147             :       call compute_and_apply_rhs(np1,n0,n0,dt/2,elem,hvcoord,hybrid,&
         148           0 :            deriv,nets,nete,eta_ave_w/3,inv_cp_full,qwater,qidx,kappa)
         149             :       ! u2 = u1 + dt/2 RHS(u1)
         150             :       call compute_and_apply_rhs(np1,np1,np1,dt/2,elem,hvcoord,hybrid,&
         151           0 :            deriv,nets,nete,eta_ave_w/3,inv_cp_full,qwater,qidx,kappa)
         152             :       ! u3 = u2 + dt/2 RHS(u2)
         153             :       call compute_and_apply_rhs(np1,np1,np1,dt/2,elem,hvcoord,hybrid,&
         154           0 :            deriv,nets,nete,eta_ave_w/3,inv_cp_full,qwater,qidx,kappa)
         155             :
         156             :       ! unew = u/3 +2*u3/3  = u + 1/3 (RHS(u) + RHS(u1) + RHS(u2))
         157           0 :       do ie=nets,nete
         158           0 :         elem(ie)%state%v(:,:,:,:,np1)= elem(ie)%state%v(:,:,:,:,n0)/3 &
         159           0 :              + 2*elem(ie)%state%v(:,:,:,:,np1)/3
         160             :         elem(ie)%state%T(:,:,:,np1)= elem(ie)%state%T(:,:,:,n0)/3 &
         161           0 :              + 2*elem(ie)%state%T(:,:,:,np1)/3
         162             :         elem(ie)%state%dp3d(:,:,:,np1)= elem(ie)%state%dp3d(:,:,:,n0)/3 &
         163           0 :              + 2*elem(ie)%state%dp3d(:,:,:,np1)/3
         164             :       enddo
         165     2216448 :     else if (tstep_type==2) then
         166             :       ! classic RK3  CFL=sqrt(3)
         167             :       ! u1 = u0 + dt/3 RHS(u0)
         168             :       call compute_and_apply_rhs(np1,n0,n0,dt/3,elem,hvcoord,hybrid,&
         169           0 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         170             :       ! u2 = u0 + dt/2 RHS(u1)
         171             :       call compute_and_apply_rhs(np1,n0,np1,dt/2,elem,hvcoord,hybrid,&
         172           0 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         173             :       ! u3 = u0 + dt RHS(u2)
         174             :       call compute_and_apply_rhs(np1,n0,np1,dt,elem,hvcoord,hybrid,&
         175           0 :            deriv,nets,nete,eta_ave_w,inv_cp_full,qwater,qidx,kappa)
         176     2216448 :     else if (tstep_type==3) then
         177             :       ! KG 4th order 4 stage:   CFL=sqrt(8)
         178             :       ! low storage version of classic RK4
         179             :       ! u1 = u0 + dt/4 RHS(u0)
         180             :       call compute_and_apply_rhs(np1,n0,n0,dt/4,elem,hvcoord,hybrid,&
         181           0 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         182             :       ! u2 = u0 + dt/3 RHS(u1)
         183             :       call compute_and_apply_rhs(np1,n0,np1,dt/3,elem,hvcoord,hybrid,&
         184           0 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         185             :       ! u3 = u0 + dt/2 RHS(u2)
         186             :       call compute_and_apply_rhs(np1,n0,np1,dt/2,elem,hvcoord,hybrid,&
         187           0 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         188             :       ! u4 = u0 + dt RHS(u3)
         189             :       call compute_and_apply_rhs(np1,n0,np1,dt,elem,hvcoord,hybrid,&
         190           0 :            deriv,nets,nete,eta_ave_w,inv_cp_full,qwater,qidx,kappa)
         191     2216448 :     else if (tstep_type==4) then
         192             :       !
         193             :       ! Ullrich 3nd order 5 stage:   CFL=sqrt( 4^2 -1) = 3.87
         194             :       ! u1 = u0 + dt/5 RHS(u0)  (save u1 in timelevel nm1)
         195             :       ! rhs: t=t
         196             :       call compute_and_apply_rhs(nm1,n0,n0,dt/5,elem,hvcoord,hybrid,&
         197     2216448 :            deriv,nets,nete,eta_ave_w/4,inv_cp_full,qwater,qidx,kappa)
         198             :       !
         199             :       ! u2 = u0 + dt/5 RHS(u1); rhs: t=t+dt/5
         200             :       !
         201             :       call compute_and_apply_rhs(np1,n0,nm1,dt/5,elem,hvcoord,hybrid,&
         202     2216448 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         203             :       !
         204             :       ! u3 = u0 + dt/3 RHS(u2); rhs: t=t+2*dt/5
         205             :       !
         206             :       call compute_and_apply_rhs(np1,n0,np1,dt/3,elem,hvcoord,hybrid,&
         207     2216448 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         208             :       !
         209             :       ! u4 = u0 + 2dt/3 RHS(u3); rhs: t=t+2*dt/5+dt/3
         210             :       !
         211             :       call compute_and_apply_rhs(np1,n0,np1,2*dt/3,elem,hvcoord,hybrid,&
         212     2216448 :            deriv,nets,nete,0.0_r8,inv_cp_full,qwater,qidx,kappa)
         213             :       ! compute (5*u1/4 - u0/4) in timelevel nm1:
         214    17800848 :       do ie=nets,nete
         215    31168800 :         elem(ie)%state%v(:,:,:,:,nm1)= (5*elem(ie)%state%v(:,:,:,:,nm1) &
         216 62368768800 :              - elem(ie)%state%v(:,:,:,:,n0) ) /4
         217             :         elem(ie)%state%T(:,:,:,nm1)= (5*elem(ie)%state%T(:,:,:,nm1) &
         218 30451917600 :              - elem(ie)%state%T(:,:,:,n0) )/4
         219             :         elem(ie)%state%dp3d(:,:,:,nm1)= (5*elem(ie)%state%dp3d(:,:,:,nm1) &
         220 30454134048 :              - elem(ie)%state%dp3d(:,:,:,n0) )/4
         221             :       enddo
         222             :       ! u5 = (5*u1/4 - u0/4) + 3dt/4 RHS(u4)
         223             :       !
         224             :       ! phl: rhs: t=t+2*dt/5+dt/3+3*dt/4         -wrong RK times ...
         225             :       !
         226             :       call compute_and_apply_rhs(np1,nm1,np1,3*dt/4,elem,hvcoord,hybrid,&
         227     2216448 :            deriv,nets,nete,3*eta_ave_w/4,inv_cp_full,qwater,qidx,kappa)
         228             :       ! final method is the same as:
         229             :       ! u5 = u0 +  dt/4 RHS(u0)) + 3dt/4 RHS(u4)
         230             :     else
         231           0 :       call endrun('ERROR: bad choice of tstep_type')
         232             :     endif
         233             :
         234             :     ! ==============================================
         235             :     ! Time-split Horizontal diffusion: nu.del^2 or nu.del^4
         236             :     ! U(*) = U(t+1)  + dt2 * HYPER_DIFF_TERM(t+1)
         237             :     ! ==============================================
         238             :
         239     2216448 :     call t_startf('advance_hypervis')
         240             :
         241             :     ! note:time step computes u(t+1)= u(t*) + RHS.
         242             :     ! for consistency, dt_vis = t-1 - t*, so this is timestep method dependent
         243             :
         244             :     ! forward-in-time, hypervis applied to dp3d
         245             :     call advance_hypervis_dp(edge3,elem,fvm,hybrid,deriv,np1,qn0,nets,nete,dt_vis,eta_ave_w,&
         246     2216448 :          inv_cp_full,hvcoord)
         247             :
         248     2216448 :     call t_stopf('advance_hypervis')
         249             :     !
         250             :     ! update psdry
         251             :     !
         252    17800848 :     do ie=nets,nete
         253   327272400 :       elem(ie)%state%psdry(:,:) = hvcoord%hyai(1)*hvcoord%ps0
         254  1467150048 :       do k=1,nlev
         255 30451917600 :         elem(ie)%state%psdry(:,:) = elem(ie)%state%psdry(:,:)+elem(ie)%state%dp3d(:,:,k,np1)
         256             :       end do
         257             :     end do
         258     2216448 :     tevolve=tevolve+dt
         259             :
         260     2216448 :     call omp_set_nested(.false.)
         261             :
         262     2216448 :   end subroutine prim_advance_exp
         263             :
         264             :
         265      738816 :   subroutine applyCAMforcing(elem,fvm,np1,np1_qdp,dt_dribble,dt_phys,nets,nete,nsubstep)
         266     2216448 :     use dimensions_mod,         only: np, nc, nlev, qsize, ntrac, use_cslam
         267             :     use element_mod,            only: element_t
         268             :     use control_mod,            only: ftype, ftype_conserve
         269             :     use fvm_control_volume_mod, only: fvm_struct
         270             :     use air_composition,        only: thermodynamic_active_species_idx_dycore
         271             :     use cam_thermo,             only: get_dp, MASS_MIXING_RATIO
         272             :     type (element_t)     , intent(inout) :: elem(:)
         273             :     type(fvm_struct)     , intent(inout) :: fvm(:)
         274             :     real (kind=r8), intent(in) :: dt_dribble, dt_phys
         275             :     integer,  intent(in) :: np1,nets,nete,np1_qdp,nsubstep
         276             :
         277             :     ! local
         278             :     integer :: i,j,k,ie,q
         279             :     real (kind=r8) :: v1,dt_local, dt_local_tracer,tmp
         280             :     real (kind=r8) :: dt_local_tracer_fvm
         281     1477632 :     real (kind=r8) :: ftmp(np,np,nlev,qsize,nets:nete) !diagnostics
         282             :     real (kind=r8) :: pdel(np,np,nlev)
         283      738816 :     real (kind=r8), allocatable :: ftmp_fvm(:,:,:,:,:) !diagnostics
         284             :
         285      738816 :     call t_startf('applyCAMforc')
         286     2955264 :     if (use_cslam) allocate(ftmp_fvm(nc,nc,nlev,ntrac,nets:nete))
         287             :
         288      738816 :     if (ftype==0) then
         289             :       !
         290             :       ! "Dribble" tendencies: divide total adjustment with nsplit and
         291             :       !                       add adjustments to state after each
         292             :       !                       vertical remap
         293             :       !
         294           0 :       dt_local            = dt_dribble
         295           0 :       dt_local_tracer     = dt_dribble
         296           0 :       dt_local_tracer_fvm = dt_dribble
         297      738816 :     else if (ftype==1) then
         298             :       !
         299             :       ! CAM-FV-stype forcing, i.e. equivalent to updating state once in the
         300             :       ! beginning of dynamics
         301             :       !
         302           0 :       dt_local            = dt_phys
         303           0 :       dt_local_tracer     = dt_phys
         304           0 :       dt_local_tracer_fvm = dt_phys
         305           0 :       if (nsubstep.ne.1) then
         306             :         !
         307             :         ! do nothing
         308             :         !
         309           0 :         dt_local            = 0.0_r8
         310           0 :         dt_local_tracer     = 0.0_r8
         311           0 :         dt_local_tracer_fvm = 0.0_r8
         312             :       end if
         313      738816 :     else if (ftype==2) then
         314             :       !
         315             :       ! do state-update for tracers and "dribbling" forcing for u,v,T
         316             :       !
         317      738816 :       dt_local            = dt_dribble
         318      738816 :       if (use_cslam) then
         319      738816 :         dt_local_tracer     = dt_dribble
         320      738816 :         dt_local_tracer_fvm = dt_phys
         321      738816 :         if (nsubstep.ne.1) then
         322      369408 :           dt_local_tracer_fvm = 0.0_r8
         323             :         end if
         324             :       else
         325           0 :         dt_local_tracer     = dt_phys
         326           0 :         dt_local_tracer_fvm = dt_phys
         327           0 :         if (nsubstep.ne.1) then
         328           0 :           dt_local_tracer     = 0.0_r8
         329           0 :           dt_local_tracer_fvm = 0.0_r8
         330             :         end if
         331             :       end if
         332             :     end if
         333             :
         334     5933616 :     do ie=nets,nete
         335             :       !
         336             :       ! tracers
         337             :       !
         338     5194800 :       if (.not.use_cslam.and.dt_local_tracer>0) then
         339             : #if (defined COLUMN_OPENMP)
         340             :     !$omp parallel do num_threads(tracer_num_threads) private(q,k,i,j,v1)
         341             : #endif
         342           0 :         do q=1,qsize
         343           0 :           do k=1,nlev
         344           0 :             do j=1,np
         345           0 :               do i=1,np
         346             :                 !
         347             :                 ! FQ holds q-tendency: (qnew-qold)/dt_physics
         348             :                 !
         349           0 :                 v1 = dt_local_tracer*elem(ie)%derived%FQ(i,j,k,q)
         350           0 :                 if (elem(ie)%state%Qdp(i,j,k,q,np1_qdp) + v1 < 0 .and. v1<0) then
         351           0 :                   if (elem(ie)%state%Qdp(i,j,k,q,np1_qdp) < 0 ) then
         352             :                     v1=0  ! Q already negative, dont make it more so
         353             :                   else
         354           0 :                     v1 = -elem(ie)%state%Qdp(i,j,k,q,np1_qdp)
         355             :                   endif
         356             :                 endif
         357           0 :                 elem(ie)%state%Qdp(i,j,k,q,np1_qdp) = elem(ie)%state%Qdp(i,j,k,q,np1_qdp)+v1
         358           0 :                 ftmp(i,j,k,q,ie) = dt_local_tracer*&
         359           0 :                      elem(ie)%derived%FQ(i,j,k,q)-v1 !Only used for diagnostics!
         360             :               enddo
         361             :             enddo
         362             :           enddo
         363             :         enddo
         364             :       else
         365 60909030000 :         ftmp(:,:,:,:,ie) = 0.0_r8
         366             :       end if
         367     5194800 :       if (use_cslam.and.dt_local_tracer_fvm>0) then
         368             :         !
         369             :         ! Repeat for the fvm tracers: fc holds tendency (fc_new-fc_old)/dt_physics
         370             :         !
         371    31168800 :         do q = 1, ntrac
         372  2688309000 :           do k = 1, nlev
         373 10657132200 :             do j = 1, nc
         374 34542822600 :               do i = 1, nc
         375 23914261800 :                 tmp = dt_local_tracer_fvm*fvm(ie)%fc(i,j,k,q)/fvm(ie)%dp_fvm(i,j,k)
         376 23914261800 :                 v1 = tmp
         377 23914261800 :                 if (fvm(ie)%c(i,j,k,q) + v1 < 0 .and. v1<0) then
         378   234923308 :                   if (fvm(ie)%c(i,j,k,q) < 0 ) then
         379             :                     v1 = 0  ! C already negative, dont make it more so
         380             :                   else
         381   234923308 :                     v1 = -fvm(ie)%c(i,j,k,q)
         382             :                   end if
         383             :                 end if
         384 23914261800 :                 fvm(ie)%c(i,j,k,q) = fvm(ie)%c(i,j,k,q)+ v1
         385 31885682400 :                 ftmp_fvm(i,j,k,q,ie) = tmp-v1 !Only used for diagnostics!
         386             :               end do
         387             :             end do
         388             :           end do
         389             :         end do
         390             :       else
         391 34573991400 :         if (use_cslam) ftmp_fvm(:,:,:,:,ie) = 0.0_r8
         392             :       end if
         393             :
         394     5933616 :       if (ftype_conserve==1.and..not.use_cslam) then
         395           0 :         call get_dp(elem(ie)%state%Qdp(:,:,:,1:qsize,np1_qdp), MASS_MIXING_RATIO, &
         396           0 :              thermodynamic_active_species_idx_dycore, elem(ie)%state%dp3d(:,:,:,np1), pdel)
         397           0 :         do k=1,nlev
         398           0 :           do j=1,np
         399           0 :             do i = 1,np
         400           0 :               pdel(i,j,k)=elem(ie)%derived%FDP(i,j,k)/pdel(i,j,k)
         401           0 :               elem(ie)%state%T(i,j,k,np1) = elem(ie)%state%T(i,j,k,np1) + &
         402           0 :                    dt_local*elem(ie)%derived%FT(i,j,k)*pdel(i,j,k)
         403             :               !
         404             :               ! momentum conserving: dp*u
         405             :               !
         406             :               elem(ie)%state%v(i,j,1,k,np1) = elem(ie)%state%v(i,j,1,k,np1) + &
         407           0 :                    dt_local*elem(ie)%derived%FM(i,j,1,k)*pdel(i,j,k)!elem(ie)%state%dp3d(i,j,k,np1)
         408             :               elem(ie)%state%v(i,j,2,k,np1) = elem(ie)%state%v(i,j,2,k,np1) + &
         409           0 :                    dt_local*elem(ie)%derived%FM(i,j,2,k)*pdel(i,j,k)!/elem(ie)%state%dp3d(i,j,k,np1)
         410             :             end do
         411             :           end do
         412             :         end do
         413             :       else
         414    10389600 :         elem(ie)%state%T(:,:,:,np1) = elem(ie)%state%T(:,:,:,np1) + &
         415 10161028800 :              dt_local*elem(ie)%derived%FT(:,:,:)
         416             :         elem(ie)%state%v(:,:,:,:,np1) = elem(ie)%state%v(:,:,:,:,np1) + &
         417 20779200000 :              dt_local*elem(ie)%derived%FM(:,:,:,:)
         418             :       end if
         419             :     end do
         420      738816 :     if (use_cslam) then
         421      738816 :       call output_qdp_var_dynamics(ftmp_fvm(:,:,:,:,:),nc,ntrac,nets,nete,'PDC')
         422             :     else
         423           0 :       call output_qdp_var_dynamics(ftmp(:,:,:,:,:),np,qsize,nets,nete,'PDC')
         424             :     end if
         425      738816 :     if (ftype==1.and.nsubstep==1) call tot_energy_dyn(elem,fvm,nets,nete,np1,np1_qdp,'p2d')
         426      738816 :     if (use_cslam) deallocate(ftmp_fvm)
         427      738816 :     call t_stopf('applyCAMforc')
         428      738816 :   end subroutine applyCAMforcing
         429             :
         430             :
         431     2216448 :   subroutine advance_hypervis_dp(edge3,elem,fvm,hybrid,deriv,nt,qn0,nets,nete,dt2,eta_ave_w,inv_cp_full,hvcoord)
         432             :     !
         433             :     !  take one timestep of:
         434             :     !          u(:,:,:,np) = u(:,:,:,np) +  dt2*nu*laplacian**order ( u )
         435             :     !          T(:,:,:,np) = T(:,:,:,np) +  dt2*nu_t*laplacian**order ( T )
         436             :     !
         437             :     !
         438             :     !  For correct scaling, dt2 should be the same 'dt2' used in the leapfrog advace
         439             :     !
         440             :     !
         441             :     use physconst,      only: cappa, cpair
         442             :     use cam_thermo,     only: get_molecular_diff_coef, get_rho_dry
         443             :     use dimensions_mod, only: np, nlev, nc, use_cslam, npsq, qsize, ksponge_end
         444             :     use dimensions_mod, only: nu_scale_top,nu_lev,kmvis_ref,kmcnd_ref,rho_ref,km_sponge_factor
         445             :     use dimensions_mod, only: nu_t_lev
         446             :     use control_mod,    only: nu, nu_t, hypervis_subcycle,hypervis_subcycle_sponge, nu_p, nu_top
         447             :     use control_mod,    only: molecular_diff,sponge_del4_lev
         448             :     use hybrid_mod,     only: hybrid_t!, get_loop_ranges
         449             :     use element_mod,    only: element_t
         450             :     use derivative_mod, only: derivative_t, laplace_sphere_wk, vlaplace_sphere_wk, vlaplace_sphere_wk_mol
         451             :     use derivative_mod, only: subcell_Laplace_fluxes, subcell_dss_fluxes
         452             :     use edge_mod,       only: edgevpack, edgevunpack, edgeDGVunpack
         453             :     use edgetype_mod,   only: EdgeBuffer_t, EdgeDescriptor_t
         454             :     use bndry_mod,      only: bndry_exchange
         455             :     use viscosity_mod,  only: biharmonic_wk_dp3d
         456             :     use hybvcoord_mod,  only: hvcoord_t
         457             :     use fvm_control_volume_mod, only: fvm_struct
         458             :     use air_composition, only: thermodynamic_active_species_idx_dycore
         459             :     use cam_history,     only: outfld, hist_fld_active
         460             :
         461             :     type (hybrid_t)    , intent(in)   :: hybrid
         462             :     type (element_t)   , intent(inout), target :: elem(:)
         463             :     type(fvm_struct)   , intent(inout)   :: fvm(:)
         464             :     type (EdgeBuffer_t), intent(inout):: edge3
         465             :     type (derivative_t), intent(in  ) :: deriv
         466             :     integer            , intent(in)   :: nets,nete, nt, qn0
         467             :     real (kind=r8)     , intent(in)   :: inv_cp_full(np,np,nlev,nets:nete)
         468             :     type (hvcoord_t)   , intent(in)   :: hvcoord
         469             :     real (kind=r8) :: eta_ave_w  ! weighting for mean flux terms
         470             :     real (kind=r8) :: dt2
         471             :     ! local
         472             :     integer :: k,kptr,i,j,ie,ic
         473             :     integer :: kbeg, kend, kblk
         474     4432896 :     real (kind=r8), dimension(np,np,2,nlev,nets:nete)      :: vtens
         475     4432896 :     real (kind=r8), dimension(np,np,nlev,nets:nete)        :: ttens, dptens
         476             :     real (kind=r8), dimension(0:np+1,0:np+1,nlev)          :: corners
         477             :     real (kind=r8), dimension(2,2,2)                       :: cflux
         478             :     real (kind=r8)                                         :: temp      (np,np,nlev)
         479             :     real (kind=r8)                                         :: tempflux(nc,nc,4)
         480     4432896 :     real (kind=r8), dimension(nc,nc,4,nlev,nets:nete)      :: dpflux
         481             :     type (EdgeDescriptor_t)                                :: desc
         482             :
         483             :     real (kind=r8), dimension(np,np)            :: lap_t,lap_dp
         484     4432896 :     real (kind=r8), dimension(np,np,ksponge_end,nets:nete):: kmvis,kmcnd,rho_dry
         485             :     real (kind=r8), dimension(np,np,nlev)       :: tmp_kmvis,tmp_kmcnd
         486             :     real (kind=r8), dimension(np,np,2)          :: lap_v
         487             :     real (kind=r8)                              :: v1,v2,v1new,v2new,dt,heating
         488             :     real (kind=r8)                              :: laplace_fluxes(nc,nc,4)
         489             :     real (kind=r8)                              :: rhypervis_subcycle
         490             :     real (kind=r8)                              :: nu_ratio1, ptop, inv_rho
         491             :     real (kind=r8)                              :: nu_temp, nu_dp, nu_velo
         492             :
         493     2216448 :     if (nu_t == 0 .and. nu == 0 .and. nu_p==0 ) return;
         494             :
         495     2216448 :     ptop = hvcoord%hyai(1)*hvcoord%ps0
         496             :
         497     2216448 :     kbeg=1; kend=nlev
         498             :
         499     2216448 :     kblk = kend - kbeg + 1
         500             :
         501     2216448 :     dt=dt2/hypervis_subcycle
         502             :
         503             :      !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
         504             :      !  hyper viscosity
         505             :      !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
         506             :
         507     8865792 :     do ic=1,hypervis_subcycle
         508     6649344 :       call tot_energy_dyn(elem,fvm,nets,nete,nt,qn0,'dBH')
         509             :
         510     6649344 :       rhypervis_subcycle=1.0_r8/real(hypervis_subcycle,kind=r8)
         511     6649344 :       call biharmonic_wk_dp3d(elem,dptens,dpflux,ttens,vtens,deriv,edge3,hybrid,nt,nets,nete,kbeg,kend)
         512             :
         513    53402544 :       do ie=nets,nete
         514             :         ! compute mean flux
         515    46753200 :         if (nu_p>0) then
         516  4394800800 :           do k=kbeg,kend
         517             :             !OMP_COLLAPSE_SIMD
         518             :             !DIR_VECTOR_ALIGNED
         519 21786991200 :             do j=1,np
         520 91308999600 :               do i=1,np
         521 >27827*10^7 :                 elem(ie)%derived%dpdiss_ave(i,j,k)=elem(ie)%derived%dpdiss_ave(i,j,k)+&
         522 >34784*10^7 :                      rhypervis_subcycle*eta_ave_w*(elem(ie)%state%dp3d(i,j,k,nt)-elem(ie)%derived%dp_ref(i,j,k))
         523             :                 elem(ie)%derived%dpdiss_biharmonic(i,j,k)=elem(ie)%derived%dpdiss_biharmonic(i,j,k)+&
         524 86960952000 :                      rhypervis_subcycle*eta_ave_w*dptens(i,j,k,ie)
         525             :               enddo
         526             :             enddo
         527             :           enddo
         528             :         endif
         529             :         !$omp parallel do num_threads(vert_num_threads) private(lap_t,lap_dp,lap_v,laplace_fluxes,nu_ratio1,i,j,k)
         530  4394800800 :         do k=kbeg,kend
         531             :           ! advace in time.
         532             :           ! note: DSS commutes with time stepping, so we can time advance and then DSS.
         533             :           ! note: weak operators alreayd have mass matrix "included"
         534             :
         535             :           !OMP_COLLAPSE_SIMD
         536             :           !DIR_VECTOR_ALIGNED
         537 21740238000 :           do j=1,np
         538 91308999600 :             do i=1,np
         539 69568761600 :               ttens(i,j,k,ie)   = -nu_t_lev(k)*ttens(i,j,k,ie)
         540 69568761600 :               dptens(i,j,k,ie)  = -nu_p*dptens(i,j,k,ie)
         541 69568761600 :               vtens(i,j,1,k,ie) = -nu_lev(k)*vtens(i,j,1,k,ie)
         542 86960952000 :               vtens(i,j,2,k,ie) = -nu_lev(k)*vtens(i,j,2,k,ie)
         543             :             enddo
         544             :           enddo
         545             :
         546  4348047600 :           if (use_cslam) then
         547             :             !OMP_COLLAPSE_SIMD
         548             :             !DIR_VECTOR_ALIGNED
         549 17392190400 :             do j=1,nc
         550 56524618800 :               do i=1,nc
         551             :                 !
         552             :                 ! del4 mass flux for CSLAM
         553             :                 !
         554 >15652*10^7 :                 elem(ie)%sub_elem_mass_flux(i,j,:,k) = elem(ie)%sub_elem_mass_flux(i,j,:,k) - &
         555 >36523*10^7 :                      rhypervis_subcycle*eta_ave_w*nu_p*dpflux(i,j,:,k,ie)
         556             :               enddo
         557             :             enddo
         558             :           endif
         559             :
         560             :           ! NOTE: we will DSS all tendicies, EXCEPT for dp3d, where we DSS the new state
         561             :           !OMP_COLLAPSE_SIMD
         562             :           !DIR_VECTOR_ALIGNED
         563 21786991200 :           do j=1,np
         564 91308999600 :             do i=1,np
         565 >34784*10^7 :               elem(ie)%state%dp3d(i,j,k,nt) = elem(ie)%state%dp3d(i,j,k,nt)*elem(ie)%spheremp(i,j)&
         566 >43480*10^7 :                    + dt*dptens(i,j,k,ie)
         567             :             enddo
         568             :           enddo
         569             :
         570             :         enddo
         571             :
         572    46753200 :         kptr = kbeg - 1
         573    46753200 :         call edgeVpack(edge3,ttens(:,:,kbeg:kend,ie),kblk,kptr,ie)
         574             :
         575    46753200 :         kptr = kbeg - 1 + nlev
         576 91355752800 :         call edgeVpack(edge3,vtens(:,:,1,kbeg:kend,ie),kblk,kptr,ie)
         577             :
         578    46753200 :         kptr = kbeg - 1 + 2*nlev
         579 91355752800 :         call edgeVpack(edge3,vtens(:,:,2,kbeg:kend,ie),kblk,kptr,ie)
         580             :
         581    46753200 :         kptr = kbeg - 1 + 3*nlev
         582    53402544 :         call edgeVpack(edge3,elem(ie)%state%dp3d(:,:,kbeg:kend,nt),kblk,kptr,ie)
         583             :       enddo
         584             :
         585     6649344 :       call bndry_exchange(hybrid,edge3,location='advance_hypervis_dp2')
         586             :
         587    53402544 :       do ie=nets,nete
         588             :
         589    46753200 :         kptr = kbeg - 1
         590    46753200 :         call edgeVunpack(edge3,ttens(:,:,kbeg:kend,ie),kblk,kptr,ie)
         591             :
         592    46753200 :         kptr = kbeg - 1 + nlev
         593 >18266*10^7 :         call edgeVunpack(edge3,vtens(:,:,1,kbeg:kend,ie),kblk,kptr,ie)
         594             :
         595    46753200 :         kptr = kbeg - 1 + 2*nlev
         596 >18266*10^7 :         call edgeVunpack(edge3,vtens(:,:,2,kbeg:kend,ie),kblk,kptr,ie)
         597             :
         598    46753200 :         if (use_cslam) then
         599  4394800800 :           do k=kbeg,kend
         600 91308999600 :             temp(:,:,k) = elem(ie)%state%dp3d(:,:,k,nt) / elem(ie)%spheremp  ! STATE before DSS
         601 >18696*10^7 :             corners(0:np+1,0:np+1,k) = 0.0_r8
         602 91355752800 :             corners(1:np  ,1:np  ,k) = elem(ie)%state%dp3d(1:np,1:np,k,nt) ! fill in interior data of STATE*mass
         603             :           enddo
         604             :         endif
         605    46753200 :         kptr = kbeg - 1 + 3*nlev
         606    46753200 :         call edgeVunpack(edge3,elem(ie)%state%dp3d(:,:,kbeg:kend,nt),kblk,kptr,ie)
         607             :
         608    46753200 :         if (use_cslam) then
         609    46753200 :           desc = elem(ie)%desc
         610             :
         611    46753200 :           kptr = kbeg - 1 + 3*nlev
         612    46753200 :           call edgeDGVunpack(edge3,corners(:,:,kbeg:kend),kblk,kptr,ie)
         613  4394800800 :           do k=kbeg,kend
         614 >18696*10^7 :             corners(:,:,k) = corners(:,:,k)/dt !note: array size is 0:np+1
         615             :             !OMP_COLLAPSE_SIMD
         616             :             !DIR_VECTOR_ALIGNED
         617 21740238000 :             do j=1,np
         618 91308999600 :               do i=1,np
         619 69568761600 :                 temp(i,j,k) =  elem(ie)%rspheremp(i,j)*elem(ie)%state%dp3d(i,j,k,nt) - temp(i,j,k)
         620 86960952000 :                 temp(i,j,k) =  temp(i,j,k)/dt
         621             :               enddo
         622             :             enddo
         623             :
         624  4348047600 :             call distribute_flux_at_corners(cflux, corners(:,:,k), desc%getmapP)
         625             :
         626 13044142800 :             cflux(1,1,:)   = elem(ie)%rspheremp(1,  1) * cflux(1,1,:)
         627 13044142800 :             cflux(2,1,:)   = elem(ie)%rspheremp(np, 1) * cflux(2,1,:)
         628 13044142800 :             cflux(1,2,:)   = elem(ie)%rspheremp(1, np) * cflux(1,2,:)
         629 13044142800 :             cflux(2,2,:)   = elem(ie)%rspheremp(np,np) * cflux(2,2,:)
         630             :
         631  4348047600 :             call subcell_dss_fluxes(temp(:,:,k), np, nc, elem(ie)%metdet,cflux,tempflux)
         632  4348047600 :             elem(ie)%sub_elem_mass_flux(:,:,:,k) = elem(ie)%sub_elem_mass_flux(:,:,:,k) + &
         633 >23484*10^7 :                  rhypervis_subcycle*eta_ave_w*tempflux
         634             :           end do
         635             :         endif
         636             :
         637             :         ! apply inverse mass matrix, accumulate tendencies
         638             :         !$omp parallel do num_threads(vert_num_threads) private(k,i,j)
         639  4394800800 :         do k=kbeg,kend
         640             :           !OMP_COLLAPSE_SIMD
         641             :           !DIR_VECTOR_ALIGNED
         642 21786991200 :           do j=1,np
         643 91308999600 :             do i=1,np
         644 69568761600 :               vtens(i,j,1,k,ie)=dt*vtens(i,j,1,k,ie)*elem(ie)%rspheremp(i,j)
         645 69568761600 :               vtens(i,j,2,k,ie)=dt*vtens(i,j,2,k,ie)*elem(ie)%rspheremp(i,j)
         646 69568761600 :               ttens(i,j,k,ie)=dt*ttens(i,j,k,ie)*elem(ie)%rspheremp(i,j)
         647 86960952000 :               elem(ie)%state%dp3d(i,j,k,nt)=elem(ie)%state%dp3d(i,j,k,nt)*elem(ie)%rspheremp(i,j)
         648             :             enddo
         649             :           enddo
         650             :         enddo
         651             :
         652             :         !$omp parallel do num_threads(vert_num_threads) private(k,i,j)
         653  4401450144 :         do k=kbeg,kend
         654             :           !OMP_COLLAPSE_SIMD
         655             :           !DIR_VECTOR_ALIGNED
         656 21786991200 :           do j=1,np
         657 91308999600 :             do i=1,np
         658             :               ! update v first (gives better results than updating v after heating)
         659 >34784*10^7 :               elem(ie)%state%v(i,j,:,k,nt)=elem(ie)%state%v(i,j,:,k,nt) + &
         660 >55655*10^7 :                    vtens(i,j,:,k,ie)
         661             :               elem(ie)%state%T(i,j,k,nt)=elem(ie)%state%T(i,j,k,nt) &
         662 86960952000 :                    +ttens(i,j,k,ie)
         663             :             enddo
         664             :           enddo
         665             :         enddo
         666             :       end do
         667             :
         668     6649344 :       call tot_energy_dyn(elem,fvm,nets,nete,nt,qn0,'dCH')
         669    53402544 :       do ie=nets,nete
         670             :         !$omp parallel do num_threads(vert_num_threads), private(k,i,j,v1,v2,heating)
         671  4167684144 :         do k=sponge_del4_lev+2,nlev
         672             :           !
         673             :           ! only do "frictional heating" away from sponge
         674             :           !
         675             :           !OMP_COLLAPSE_SIMD
         676             :           !DIR_VECTOR_ALIGNED
         677 20618161200 :           do j=1,np
         678 86399913600 :             do i=1,np
         679 65828505600 :               v1new=elem(ie)%state%v(i,j,1,k,nt)
         680 65828505600 :               v2new=elem(ie)%state%v(i,j,2,k,nt)
         681 65828505600 :               v1   =elem(ie)%state%v(i,j,1,k,nt)- vtens(i,j,1,k,ie)
         682 65828505600 :               v2   =elem(ie)%state%v(i,j,2,k,nt)- vtens(i,j,2,k,ie)
         683 65828505600 :               heating = 0.5_r8*(v1new*v1new+v2new*v2new-(v1*v1+v2*v2))
         684             :
         685             :               elem(ie)%state%T(i,j,k,nt)=elem(ie)%state%T(i,j,k,nt) &
         686 82285632000 :                    -heating*inv_cp_full(i,j,k,ie)
         687             :             enddo
         688             :           enddo
         689             :         enddo
         690             :       enddo
         691     8865792 :       call tot_energy_dyn(elem,fvm,nets,nete,nt,qn0,'dAH')
         692             :     end do
         693             :
         694             :     !
         695             :     !***************************************************************
         696             :     !
         697             :     ! sponge layer damping
         698             :     !
         699             :     !***************************************************************
         700             :     !
         701     2216448 :     call t_startf('sponge_diff')
         702             :     !
         703             :     ! compute coefficients for horizontal diffusion
         704             :     !
         705     2216448 :     if (molecular_diff==1) then
         706           0 :       do ie=nets,nete
         707           0 :         call get_rho_dry(elem(ie)%state%Qdp(:,:,:,1:qsize,qn0),  &
         708             :              elem(ie)%state%T(:,:,:,nt), ptop, elem(ie)%state%dp3d(:,:,:,nt),&
         709             :              .true., rho_dry=rho_dry(:,:,:,ie),                                              &
         710           0 :              active_species_idx_dycore=thermodynamic_active_species_idx_dycore)
         711             :       end do
         712             :
         713           0 :       do ie=nets,nete
         714             :         !
         715             :         ! compute molecular diffusion and thermal conductivity coefficients at mid-levels
         716             :         !
         717           0 :         call get_molecular_diff_coef(elem(ie)%state%T(:,:,:,nt), .false., km_sponge_factor(1:ksponge_end), kmvis(:,:,:,ie),&
         718           0 :              kmcnd(:,:,:,ie), elem(ie)%state%Qdp(:,:,:,1:qsize,qn0), fact=1.0_r8/elem(ie)%state%dp3d(:,:,1:ksponge_end,nt),&
         719           0 :              active_species_idx_dycore=thermodynamic_active_species_idx_dycore)
         720             :       end do
         721             :       !
         722             :       ! diagnostics
         723             :       !
         724           0 :       if (hist_fld_active('nu_kmvis')) then
         725           0 :         do ie=nets,nete
         726           0 :           tmp_kmvis = 0.0_r8
         727           0 :           do k=1,ksponge_end
         728           0 :             tmp_kmvis(:,:,k) = kmvis(:,:,k,ie)/rho_dry(:,:,k,ie)
         729             :           end do
         730           0 :           call outfld('nu_kmvis',RESHAPE(tmp_kmvis(:,:,:), (/npsq,nlev/)), npsq, ie)
         731             :         end do
         732             :       end if
         733           0 :       if (hist_fld_active('nu_kmcnd')) then
         734           0 :         do ie=nets,nete
         735           0 :           tmp_kmcnd = 0.0_r8
         736           0 :           do k=1,ksponge_end
         737           0 :             tmp_kmcnd(:,:,k) = kmcnd(:,:,k,ie)*inv_cp_full(:,:,k,ie)/rho_dry(:,:,k,ie)
         738             :           end do
         739           0 :           call outfld('nu_kmcnd',RESHAPE(tmp_kmcnd(:,:,:), (/npsq,nlev/)), npsq, ie)
         740             :         end do
         741             :       end if
         742           0 :       if (hist_fld_active('nu_kmcnd_dp')) then
         743           0 :         do ie=nets,nete
         744           0 :           tmp_kmcnd = 0.0_r8
         745           0 :           do k=1,ksponge_end
         746           0 :             tmp_kmcnd(:,:,k) = kmcnd(:,:,k,ie)/(cpair*rho_ref(k))
         747             :           end do
         748           0 :           call outfld('nu_kmcnd_dp',RESHAPE(tmp_kmcnd(:,:,:), (/npsq,nlev/)), npsq, ie)
         749             :         end do
         750             :       end if
         751             :
         752             :       !
         753             :       ! scale by reference value
         754             :       !
         755           0 :       do ie=nets,nete
         756           0 :         do k=1,ksponge_end
         757           0 :           kmcnd(:,:,k,ie) = kmcnd(:,:,k,ie)/kmcnd_ref(k)
         758           0 :           kmvis(:,:,k,ie) = kmvis(:,:,k,ie)/kmvis_ref(k)
         759             :         end do
         760             :       end do
         761             :     end if
         762             :     !
         763             :     ! Horizontal Laplacian diffusion
         764             :     !
         765     2216448 :     dt=dt2/hypervis_subcycle_sponge
         766     2216448 :     call tot_energy_dyn(elem,fvm,nets,nete,nt,qn0,'dBS')
         767     2216448 :     kblk = ksponge_end
         768     8865792 :     do ic=1,hypervis_subcycle_sponge
         769     6649344 :       rhypervis_subcycle=1.0_r8/real(hypervis_subcycle_sponge,kind=r8)
         770    53402544 :       do ie=nets,nete
         771   233766000 :         do k=1,ksponge_end
         772   187012800 :           if (nu_top>0.or.molecular_diff>1) then
         773             :             !**************************************************************
         774             :             !
         775             :             ! traditional sponge formulation (constant coefficients)
         776             :             !
         777             :             !**************************************************************
         778   187012800 :             call laplace_sphere_wk(elem(ie)%state%T(:,:,k,nt),deriv,elem(ie),lap_t,var_coef=.false.)
         779   187012800 :             call laplace_sphere_wk(elem(ie)%state%dp3d(:,:,k,nt),deriv,elem(ie),lap_dp,var_coef=.false.)
         780   187012800 :             nu_ratio1=1.0_r8
         781   187012800 :             call vlaplace_sphere_wk(elem(ie)%state%v(:,:,:,k,nt),deriv,elem(ie),.true.,lap_v, var_coef=.false.,&
         782   374025600 :                  nu_ratio=nu_ratio1)
         783             :
         784   187012800 :             nu_dp   = nu_scale_top(k)*nu_top
         785   187012800 :             nu_temp = nu_scale_top(k)*nu_top
         786   187012800 :             nu_velo = nu_scale_top(k)*nu_top
         787   187012800 :             if (molecular_diff>1) then
         788           0 :               nu_dp   = nu_dp   + kmcnd_ref(k)/(cpair*rho_ref(k))
         789             :             end if
         790             :
         791             :             !OMP_COLLAPSE_SIMD
         792             :             !DIR_VECTOR_ALIGNED
         793   935064000 :             do j=1,np
         794  3927268800 :               do i=1,np
         795  2992204800 :                 ttens(i,j,k,ie)   = nu_temp*lap_t(i,j)
         796  2992204800 :                 dptens(i,j,k,ie)  = nu_dp  *lap_dp(i,j)
         797  2992204800 :                 vtens(i,j,1,k,ie) = nu_velo*lap_v(i,j,1)
         798  3740256000 :                 vtens(i,j,2,k,ie) = nu_velo*lap_v(i,j,2)
         799             :               enddo
         800             :             enddo
         801             :           end if
         802   187012800 :           if (molecular_diff>0) then
         803             :             !************************************************************************
         804             :             !
         805             :             ! sponge formulation using molecular diffusion and thermal conductivity
         806             :             !
         807             :             !************************************************************************
         808           0 :             call vlaplace_sphere_wk_mol(elem(ie)%state%v(:,:,:,k,nt),deriv,elem(ie),.false.,kmvis(:,:,k,ie),lap_v)
         809           0 :             call laplace_sphere_wk(elem(ie)%state%T(:,:,k,nt),deriv,elem(ie),lap_t ,var_coef=.false.,mol_nu=kmcnd(:,:,k,ie))
         810             :
         811             :             !OMP_COLLAPSE_SIMD
         812             :             !DIR_VECTOR_ALIGNED
         813           0 :             do j=1,np
         814           0 :               do i=1,np
         815           0 :                 inv_rho = 1.0_r8/rho_dry(i,j,k,ie)
         816           0 :                 ttens(i,j,k,ie)   = ttens(i,j,k,ie)  + kmcnd_ref(k)*inv_cp_full(i,j,k,ie)*inv_rho*lap_t(i,j)
         817           0 :                 vtens(i,j,1,k,ie) = vtens(i,j,1,k,ie)+ kmvis_ref(k)*inv_rho*lap_v(i,j,1)
         818           0 :                 vtens(i,j,2,k,ie) = vtens(i,j,2,k,ie)+ kmvis_ref(k)*inv_rho*lap_v(i,j,2)
         819             :               end do
         820             :             end do
         821             :           end if
         822             :
         823   187012800 :           if (use_cslam.and.nu_dp>0) then
         824             :             !
         825             :             ! mass flux for CSLAM due to sponge layer diffusion on dp
         826             :             !
         827   187012800 :             call subcell_Laplace_fluxes(elem(ie)%state%dp3d(:,:,k,nt),deriv,elem(ie),np,nc,laplace_fluxes)
         828   374025600 :             elem(ie)%sub_elem_mass_flux(:,:,:,k) = elem(ie)%sub_elem_mass_flux(:,:,:,k) + &
         829 10285704000 :                  rhypervis_subcycle*eta_ave_w*nu_dp*laplace_fluxes
         830             :           endif
         831             :
         832             :           ! NOTE: we will DSS all tendencies, EXCEPT for dp3d, where we DSS the new state
         833             :           !OMP_COLLAPSE_SIMD
         834             :           !DIR_VECTOR_ALIGNED
         835   981817200 :           do j=1,np
         836  3927268800 :             do i=1,np
         837 14961024000 :               elem(ie)%state%dp3d(i,j,k,nt) = elem(ie)%state%dp3d(i,j,k,nt)*elem(ie)%spheremp(i,j)&
         838 18701280000 :                    + dt*dptens(i,j,k,ie)
         839             :             enddo
         840             :           enddo
         841             :
         842             :         enddo
         843             :
         844             :
         845    46753200 :         kptr = 0
         846    46753200 :         call edgeVpack(edgeSponge,ttens(:,:,1:ksponge_end,ie),kblk,kptr,ie)
         847             :
         848    46753200 :         kptr = ksponge_end
         849  3974022000 :         call edgeVpack(edgeSponge,vtens(:,:,1,1:ksponge_end,ie),kblk,kptr,ie)
         850             :
         851    46753200 :         kptr = 2*ksponge_end
         852  3974022000 :         call edgeVpack(edgeSponge,vtens(:,:,2,1:ksponge_end,ie),kblk,kptr,ie)
         853             :
         854    46753200 :         kptr = 3*ksponge_end
         855    53402544 :         call edgeVpack(edgeSponge,elem(ie)%state%dp3d(:,:,1:ksponge_end,nt),kblk,kptr,ie)
         856             :       enddo
         857             :
         858     6649344 :       call bndry_exchange(hybrid,edgeSponge,location='advance_hypervis_sponge')
         859             :
         860    55618992 :       do ie=nets,nete
         861             :
         862    46753200 :         kptr = 0
         863    46753200 :         call edgeVunpack(edgeSponge,ttens(:,:,1:ksponge_end,ie),kblk,kptr,ie)
         864             :
         865    46753200 :         kptr = ksponge_end
         866  7901290800 :         call edgeVunpack(edgeSponge,vtens(:,:,1,1:ksponge_end,ie),kblk,kptr,ie)
         867             :
         868    46753200 :         kptr = 2*ksponge_end
         869  7901290800 :         call edgeVunpack(edgeSponge,vtens(:,:,2,1:ksponge_end,ie),kblk,kptr,ie)
         870             :
         871    46753200 :         if (use_cslam.and.nu_dp>0.0_r8) then
         872   233766000 :           do k=1,ksponge_end
         873  3927268800 :             temp(:,:,k) = elem(ie)%state%dp3d(:,:,k,nt) / elem(ie)%spheremp  ! STATE before DSS
         874  8041550400 :             corners(0:np+1,0:np+1,k) = 0.0_r8
         875  3974022000 :             corners(1:np  ,1:np  ,k) = elem(ie)%state%dp3d(1:np,1:np,k,nt) ! fill in interior data of STATE*mass
         876             :           enddo
         877             :         endif
         878    46753200 :         kptr = 3*ksponge_end
         879    46753200 :         call edgeVunpack(edgeSponge,elem(ie)%state%dp3d(:,:,1:ksponge_end,nt),kblk,kptr,ie)
         880             :
         881    46753200 :         if (use_cslam.and.nu_dp>0.0_r8) then
         882    46753200 :           desc = elem(ie)%desc
         883             :
         884    46753200 :           kptr = 3*ksponge_end
         885    46753200 :           call edgeDGVunpack(edgeSponge,corners(:,:,1:ksponge_end),kblk,kptr,ie)
         886   233766000 :           do k=1,ksponge_end
         887  8041550400 :             corners(:,:,k) = corners(:,:,k)/dt !note: array size is 0:np+1
         888             :             !OMP_COLLAPSE_SIMD
         889             :             !DIR_VECTOR_ALIGNED
         890   935064000 :             do j=1,np
         891  3927268800 :               do i=1,np
         892  2992204800 :                 temp(i,j,k) =  elem(ie)%rspheremp(i,j)*elem(ie)%state%dp3d(i,j,k,nt) - temp(i,j,k)
         893  3740256000 :                 temp(i,j,k) =  temp(i,j,k)/dt
         894             :               enddo
         895             :             enddo
         896             :
         897   187012800 :             call distribute_flux_at_corners(cflux, corners(:,:,k), desc%getmapP)
         898             :
         899   561038400 :             cflux(1,1,:)   = elem(ie)%rspheremp(1,  1) * cflux(1,1,:)
         900   561038400 :             cflux(2,1,:)   = elem(ie)%rspheremp(np, 1) * cflux(2,1,:)
         901   561038400 :             cflux(1,2,:)   = elem(ie)%rspheremp(1, np) * cflux(1,2,:)
         902   561038400 :             cflux(2,2,:)   = elem(ie)%rspheremp(np,np) * cflux(2,2,:)
         903             :
         904   187012800 :             call subcell_dss_fluxes(temp(:,:,k), np, nc, elem(ie)%metdet,cflux,tempflux)
         905   187012800 :             elem(ie)%sub_elem_mass_flux(:,:,:,k) = elem(ie)%sub_elem_mass_flux(:,:,:,k) + &
         906 10145444400 :                  rhypervis_subcycle*eta_ave_w*tempflux
         907             :           end do
         908             :         endif
         909             :
         910             :         ! apply inverse mass matrix, accumulate tendencies
         911             :         !$omp parallel do num_threads(vert_num_threads) private(k,i,j)
         912   233766000 :         do k=1,ksponge_end
         913             :           !OMP_COLLAPSE_SIMD
         914             :           !DIR_VECTOR_ALIGNED
         915   981817200 :           do j=1,np
         916  3927268800 :             do i=1,np
         917  2992204800 :               vtens(i,j,1,k,ie)=dt*vtens(i,j,1,k,ie)*elem(ie)%rspheremp(i,j)
         918  2992204800 :               vtens(i,j,2,k,ie)=dt*vtens(i,j,2,k,ie)*elem(ie)%rspheremp(i,j)
         919  2992204800 :               ttens(i,j,k,ie)=dt*ttens(i,j,k,ie)*elem(ie)%rspheremp(i,j)
         920  2992204800 :               elem(ie)%state%dp3d(i,j,k,nt)=elem(ie)%state%dp3d(i,j,k,nt)*elem(ie)%rspheremp(i,j)
         921             :               ! update v first (gives better results than updating v after heating)
         922  8976614400 :               elem(ie)%state%v(i,j,:,k,nt)=elem(ie)%state%v(i,j,:,k,nt) + vtens(i,j,:,k,ie)
         923  3740256000 :               elem(ie)%state%T(i,j,  k,nt)=elem(ie)%state%T(i,j,  k,nt) + ttens(i,j,  k,ie)
         924             :             enddo
         925             :           enddo
         926             :         enddo
         927    53402544 :         if (molecular_diff>0) then
         928             :           !
         929             :           ! no frictional heating for artificial sponge
         930             :           !
         931             :           !$omp parallel do num_threads(vert_num_threads) private(k,i,j,v1,v2,v1new,v2new)
         932           0 :           do k=1,ksponge_end
         933             :             !OMP_COLLAPSE_SIMD
         934             :             !DIR_VECTOR_ALIGNED
         935           0 :             do j=1,np
         936           0 :               do i=1,np
         937           0 :                 v1new=elem(ie)%state%v(i,j,1,k,nt)
         938           0 :                 v2new=elem(ie)%state%v(i,j,2,k,nt)
         939           0 :                 v1   =elem(ie)%state%v(i,j,1,k,nt)- vtens(i,j,1,k,ie)
         940           0 :                 v2   =elem(ie)%state%v(i,j,2,k,nt)- vtens(i,j,2,k,ie)
         941             :                 !
         942             :                 ! frictional heating
         943             :                 !
         944           0 :                 heating = 0.5_r8*(v1new*v1new+v2new*v2new-(v1*v1+v2*v2))
         945             :                 elem(ie)%state%T(i,j,k,nt)=elem(ie)%state%T(i,j,k,nt) &
         946           0 :                      -heating*inv_cp_full(i,j,k,ie)
         947             :               enddo
         948             :             enddo
         949             :           enddo
         950             :         end if
         951             :       end do
         952             :     end do
         953     2216448 :     call t_stopf('sponge_diff')
         954     2216448 :     call tot_energy_dyn(elem,fvm,nets,nete,nt,qn0,'dAS')
         955     4432896 :   end subroutine advance_hypervis_dp
         956             :
         957             :
         958             :
         959    33246720 :    subroutine compute_and_apply_rhs(np1,nm1,n0,dt2,elem,hvcoord,hybrid,&
         960    11082240 :         deriv,nets,nete,eta_ave_w,inv_cp_full,qwater,qidx,kappa)
         961             :      ! ===================================
         962             :      ! compute the RHS, accumulate into u(np1) and apply DSS
         963             :      !
         964             :      !           u(np1) = u(nm1) + dt2*DSS[ RHS(u(n0)) ]
         965             :      !
         966             :      ! This subroutine is normally called to compute a leapfrog timestep
         967             :      ! but by adjusting np1,nm1,n0 and dt2, many other timesteps can be
         968             :      ! accomodated.  For example, setting nm1=np1=n0 this routine will
         969             :      ! take a forward euler step, overwriting the input with the output.
         970             :      !
         971             :      ! if  dt2<0, then the DSS'd RHS is returned in timelevel np1
         972             :      !
         973             :      ! Combining the RHS and DSS pack operation in one routine
         974             :      ! allows us to fuse these two loops for more cache reuse
         975             :      !
         976             :      ! Combining the dt advance and DSS unpack operation in one routine
         977             :      ! allows us to fuse these two loops for more cache reuse
         978             :      !
         979             :      ! ===================================
         980     2216448 :      use dimensions_mod,  only: np, nc, nlev, use_cslam
         981             :      use control_mod,     only: pgf_formulation
         982             :      use hybrid_mod,      only: hybrid_t
         983             :      use element_mod,     only: element_t
         984             :      use derivative_mod,  only: derivative_t, divergence_sphere, gradient_sphere, vorticity_sphere
         985             :      use derivative_mod,  only: subcell_div_fluxes, subcell_dss_fluxes
         986             :      use edge_mod,        only: edgevpack, edgevunpack, edgeDGVunpack
         987             :      use edgetype_mod,    only: edgedescriptor_t
         988             :      use bndry_mod,       only: bndry_exchange
         989             :      use hybvcoord_mod,   only: hvcoord_t
         990             :      use cam_thermo,      only: get_gz, get_virtual_temp
         991             :      use air_composition, only: thermodynamic_active_species_num, dry_air_species_num
         992             :      use air_composition, only: get_cp_dry, get_R_dry
         993             :      use physconst,       only: tref,cpair,rga,lapse_rate
         994             :
         995             :      implicit none
         996             :      integer,        intent(in) :: np1,nm1,n0,nets,nete
         997             :      real (kind=r8), intent(in) :: dt2
         998             :
         999             :      type (hvcoord_t)     , intent(in) :: hvcoord
        1000             :      type (hybrid_t)      , intent(in) :: hybrid
        1001             :      type (element_t)     , intent(inout), target :: elem(:)
        1002             :      type (derivative_t)  , intent(in) :: deriv
        1003             :      real (kind=r8)       , intent(in) :: inv_cp_full(np,np,nlev,nets:nete)
        1004             :      real (kind=r8)       , intent(in) :: qwater(np,np,nlev,thermodynamic_active_species_num,nets:nete)
        1005             :      integer              , intent(in) :: qidx(thermodynamic_active_species_num)
        1006             :      real (kind=r8)       , intent(in) :: kappa(np,np,nlev,nets:nete)
        1007             :
        1008             :      real (kind=r8) :: eta_ave_w  ! weighting for eta_dot_dpdn mean flux
        1009             :
        1010             :     ! local
        1011             :      real (kind=r8), dimension(np,np,nlev)                         :: phi
        1012             :      real (kind=r8), dimension(np,np,nlev)                         :: omega_full
        1013             :      real (kind=r8), dimension(np,np,nlev)                         :: divdp_dry
        1014             :      real (kind=r8), dimension(np,np,nlev)                         :: divdp_full
        1015             :      real (kind=r8), dimension(np,np,2)                            :: vtemp
        1016             :      real (kind=r8), dimension(np,np,2)                            :: grad_kappa_term
        1017             :      real (kind=r8), dimension(np,np,2,nlev)                       :: vdp_dry
        1018             :      real (kind=r8), dimension(np,np,2,nlev)                       :: vdp_full
        1019             :      real (kind=r8), dimension(np,np,nlev)                         :: vgrad_p_full
        1020             :      real (kind=r8), dimension(np,np,2     )                       :: v            !
        1021             :      real (kind=r8), dimension(np,np)                              :: vgrad_T      ! v.grad(T)
        1022             :      real (kind=r8), dimension(np,np)                              :: Ephi         ! kinetic energy + PHI term
        1023             :      real (kind=r8), dimension(np,np,2,nlev)                       :: grad_p_full
        1024             :      real (kind=r8), dimension(np,np,nlev)                         :: vort         ! vorticity
        1025             :      real (kind=r8), dimension(np,np,nlev)                         :: dp_dry       ! delta pressure dry
        1026             :      real (kind=r8), dimension(np,np,nlev)                         :: R_dry, cp_dry!
        1027             :      real (kind=r8), dimension(np,np,nlev)                         :: p_full       ! pressure
        1028             :      real (kind=r8), dimension(np,np,nlev)                         :: dp_full
        1029             :      real (kind=r8), dimension(np,np)                              :: exner
        1030             :      real (kind=r8), dimension(0:np+1,0:np+1,nlev)                 :: corners
        1031             :      real (kind=r8), dimension(2,2,2)                              :: cflux
        1032             :      real (kind=r8), dimension(np,np)                              :: suml
        1033             :      real (kind=r8) :: vtens1(np,np,nlev),vtens2(np,np,nlev),ttens(np,np,nlev)
        1034             :      real (kind=r8) :: stashdp3d (np,np,nlev),tempdp3d(np,np), tempflux(nc,nc,4)
        1035             :      real (kind=r8) :: ckk, term, T_v(np,np,nlev)
        1036             :      real (kind=r8), dimension(np,np,2) :: pgf_term
        1037             :      real (kind=r8), dimension(np,np,2) :: grad_exner,grad_logexner
        1038             :      real (kind=r8) :: T0,T1
        1039             :      real (kind=r8), dimension(np,np)   :: theta_v
        1040             :
        1041             :      type (EdgeDescriptor_t):: desc
        1042             :
        1043             :      real (kind=r8) :: sum_water(np,np,nlev), density_inv(np,np)
        1044             :      real (kind=r8) :: E,v1,v2,glnps1,glnps2
        1045             :      integer        :: i,j,k,kptr,ie
        1046             :      real (kind=r8) :: ptop
        1047             :
        1048             : !JMD  call t_barrierf('sync_compute_and_apply_rhs', hybrid%par%comm)
        1049    11082240 :      call t_adj_detailf(+1)
        1050    11082240 :      call t_startf('compute_and_apply_rhs')
        1051    11082240 :      ptop = hvcoord%hyai(1)*hvcoord%ps0
        1052    89004240 :      do ie=nets,nete
        1053             :        !
        1054             :        ! compute virtual temperature and sum_water
        1055             :        !
        1056    77922000 :        call get_virtual_temp(qwater(:,:,:,:,ie), t_v(:,:,:),temp=elem(ie)%state%T(:,:,:,n0),&
        1057   155844000 :             sum_q =sum_water(:,:,:), active_species_idx_dycore=qidx)
        1058    77922000 :        call get_R_dry(qwater(:,:,:,:,ie), qidx, R_dry)
        1059    77922000 :        call get_cp_dry(qwater(:,:,:,:,ie), qidx, cp_dry)
        1060             :
        1061  7324668000 :        do k=1,nlev
        1062 >15218*10^7 :          dp_dry(:,:,k)  = elem(ie)%state%dp3d(:,:,k,n0)
        1063 >15225*10^7 :          dp_full(:,:,k) = sum_water(:,:,k)*dp_dry(:,:,k)
        1064             :        end do
        1065    77922000 :        call get_gz(dp_full, T_v, R_dry, elem(ie)%state%phis, ptop, phi, pmid=p_full)
        1066  7324668000 :        do k=1,nlev
        1067             :          ! vertically lagrangian code: we advect dp3d instead of ps
        1068             :          ! we also need grad(p) at all levels (not just grad(ps))
        1069             :          !p(k)= hyam(k)*ps0 + hybm(k)*ps
        1070             :          !    = .5_r8*(hyai(k+1)+hyai(k))*ps0 + .5_r8*(hybi(k+1)+hybi(k))*ps
        1071             :          !    = .5_r8*(ph(k+1) + ph(k) )  = ph(k) + dp(k)/2
        1072             :          !
        1073             :          ! p(k+1)-p(k) = ph(k+1)-ph(k) + (dp(k+1)-dp(k))/2
        1074             :          !             = dp(k) + (dp(k+1)-dp(k))/2 = (dp(k+1)+dp(k))/2
        1075             :
        1076  7246746000 :          call gradient_sphere(p_full(:,:,k),deriv,elem(ie)%Dinv,grad_p_full(:,:,:,k))
        1077             :          ! ==============================
        1078             :          ! compute vgrad_lnps - for omega_full
        1079             :          ! ==============================
        1080             :          !OMP_COLLAPSE_SIMD
        1081             :          !DIR_VECTOR_ALIGNED
        1082 36233730000 :          do j=1,np
        1083 >15218*10^7 :            do i=1,np
        1084 >11594*10^7 :              v1 = elem(ie)%state%v(i,j,1,k,n0)
        1085 >11594*10^7 :              v2 = elem(ie)%state%v(i,j,2,k,n0)
        1086 >11594*10^7 :              vgrad_p_full(i,j,k) = (v1*grad_p_full(i,j,1,k) + v2*grad_p_full(i,j,2,k))
        1087 >11594*10^7 :              vdp_dry(i,j,1,k) = v1*dp_dry(i,j,k)
        1088 >11594*10^7 :              vdp_dry(i,j,2,k) = v2*dp_dry(i,j,k)
        1089 >11594*10^7 :              vdp_full(i,j,1,k) = v1*dp_full(i,j,k)
        1090 >14493*10^7 :              vdp_full(i,j,2,k) = v2*dp_full(i,j,k)
        1091             :            end do
        1092             :          end do
        1093             :          ! ================================
        1094             :          ! Accumulate mean Vel_rho flux in vn0
        1095             :          ! ================================
        1096             :          !OMP_COLLAPSE_SIMD
        1097             :          !DIR_VECTOR_ALIGNED
        1098 36233730000 :          do j=1,np
        1099 >15218*10^7 :            do i=1,np
        1100 >11594*10^7 :              elem(ie)%derived%vn0(i,j,1,k)=elem(ie)%derived%vn0(i,j,1,k)+eta_ave_w*vdp_dry(i,j,1,k)
        1101 >14493*10^7 :              elem(ie)%derived%vn0(i,j,2,k)=elem(ie)%derived%vn0(i,j,2,k)+eta_ave_w*vdp_dry(i,j,2,k)
        1102             :            enddo
        1103             :          enddo
        1104             :          !divdp_dry(:,:,k)
        1105             :          ! =========================================
        1106             :          !
        1107             :          ! Compute relative vorticity and divergence
        1108             :          !
        1109             :          ! =========================================
        1110  7246746000 :          call divergence_sphere(vdp_dry(:,:,:,k),deriv,elem(ie),divdp_dry(:,:,k))
        1111  7246746000 :          call divergence_sphere(vdp_full(:,:,:,k),deriv,elem(ie),divdp_full(:,:,k))
        1112  7324668000 :          call vorticity_sphere(elem(ie)%state%v(:,:,:,k,n0),deriv,elem(ie),vort(:,:,k))
        1113             :        enddo
        1114             :
        1115             :        ! ====================================================
        1116             :        ! Compute omega_full
        1117             :        ! ====================================================
        1118    77922000 :        ckk         = 0.5_r8
        1119    77922000 :        suml(:,:  ) = 0
        1120             : #if (defined COLUMN_OPENMP)
        1121             : !$omp parallel do num_threads(vert_num_threads) private(k,j,i,ckk,term)
        1122             : #endif
        1123  7324668000 :        do k=1,nlev
        1124             :         !OMP_COLLAPSE_SIMD
        1125             :         !DIR_VECTOR_ALIGNED
        1126 36311652000 :          do j=1,np   !   Loop inversion (AAM)
        1127 >15218*10^7 :            do i=1,np
        1128 >11594*10^7 :              term         = -divdp_full(i,j,k)
        1129             :
        1130 >11594*10^7 :              v1 = elem(ie)%state%v(i,j,1,k,n0)
        1131 >11594*10^7 :              v2 = elem(ie)%state%v(i,j,2,k,n0)
        1132             :
        1133 >11594*10^7 :              omega_full(i,j,k) = suml(i,j) + ckk*term+vgrad_p_full(i,j,k)
        1134 >14493*10^7 :              suml(i,j)    = suml(i,j)   + term
        1135             :            end do
        1136             :          end do
        1137             :        end do
        1138             : #if (defined COLUMN_OPENMP)
        1139             :      !$omp parallel do num_threads(vert_num_threads) private(k)
        1140             : #endif
        1141  7324668000 :        do k=1,nlev  !  Loop index added (AAM)
        1142             :          elem(ie)%derived%omega(:,:,k) = &
        1143 >15225*10^7 :               elem(ie)%derived%omega(:,:,k) + eta_ave_w*omega_full(:,:,k)
        1144             :        enddo
        1145             :        ! ==============================================
        1146             :        ! Compute phi + kinetic energy term: 10*nv*nv Flops
        1147             :        ! ==============================================
        1148             : #if (defined COLUMN_OPENMP)
        1149             : !$omp parallel do num_threads(vert_num_threads) private(k,i,j,v1,v2,E,Ephi,vtemp,vgrad_T,gpterm,glnps1,glnps2)
        1150             : #endif
        1151  7324668000 :        vertloop: do k=1,nlev
        1152             :         !OMP_COLLAPSE_SIMD
        1153             :         !DIR_VECTOR_ALIGNED
        1154 36233730000 :          do j=1,np
        1155 >15218*10^7 :            do i=1,np
        1156 >11594*10^7 :              v1     = elem(ie)%state%v(i,j,1,k,n0)
        1157 >11594*10^7 :              v2     = elem(ie)%state%v(i,j,2,k,n0)
        1158 >11594*10^7 :              E = 0.5_r8*( v1*v1 + v2*v2 )
        1159 >14493*10^7 :              Ephi(i,j)=E+phi(i,j,k)
        1160             :            end do
        1161             :          end do
        1162             :          ! ================================================
        1163             :          ! compute gradp term (ps/p)*(dp/dps)*T
        1164             :          ! ================================================
        1165  7246746000 :          call gradient_sphere(elem(ie)%state%T(:,:,k,n0),deriv,elem(ie)%Dinv,vtemp)
        1166             :         !OMP_COLLAPSE_SIMD
        1167             :         !DIR_VECTOR_ALIGNED
        1168 36233730000 :          do j=1,np
        1169 >15218*10^7 :            do i=1,np
        1170 >11594*10^7 :              v1     = elem(ie)%state%v(i,j,1,k,n0)
        1171 >11594*10^7 :              v2     = elem(ie)%state%v(i,j,2,k,n0)
        1172 >14493*10^7 :              vgrad_T(i,j) =  v1*vtemp(i,j,1) + v2*vtemp(i,j,2)
        1173             :            end do
        1174             :          end do
        1175             :
        1176             :
        1177             :          ! vtemp = grad ( E + PHI )
        1178             :          ! vtemp = gradient_sphere(Ephi(:,:),deriv,elem(ie)%Dinv)
        1179  7246746000 :          call gradient_sphere(Ephi(:,:),deriv,elem(ie)%Dinv,vtemp)
        1180 >15218*10^7 :          density_inv(:,:) = R_dry(:,:,k)*T_v(:,:,k)/p_full(:,:,k)
        1181  7246746000 :          if (pgf_formulation==1.or.(pgf_formulation==3.and.hvcoord%hybm(k)>0._r8)) then
        1182  7246746000 :            if (dry_air_species_num==0) then
        1183 >15218*10^7 :              exner(:,:)=(p_full(:,:,k)/hvcoord%ps0)**kappa(:,:,k,ie)
        1184 >15218*10^7 :              theta_v(:,:)=T_v(:,:,k)/exner(:,:)
        1185  7246746000 :              call gradient_sphere(exner(:,:),deriv,elem(ie)%Dinv,grad_exner)
        1186 >15218*10^7 :              pgf_term(:,:,1) = cp_dry(:,:,k)*theta_v(:,:)*grad_exner(:,:,1)
        1187 >15218*10^7 :              pgf_term(:,:,2) = cp_dry(:,:,k)*theta_v(:,:)*grad_exner(:,:,2)
        1188             :            else
        1189           0 :              exner(:,:)=(p_full(:,:,k)/hvcoord%ps0)**kappa(:,:,k,ie)
        1190           0 :              theta_v(:,:)=T_v(:,:,k)/exner(:,:)
        1191           0 :              call gradient_sphere(exner(:,:),deriv,elem(ie)%Dinv,grad_exner)
        1192           0 :              call gradient_sphere(kappa(:,:,k,ie),deriv,elem(ie)%Dinv,grad_kappa_term)
        1193           0 :              suml = exner(:,:)*LOG(p_full(:,:,k)/hvcoord%ps0)
        1194           0 :              grad_kappa_term(:,:,1)=-suml*grad_kappa_term(:,:,1)
        1195           0 :              grad_kappa_term(:,:,2)=-suml*grad_kappa_term(:,:,2)
        1196           0 :              pgf_term(:,:,1) = cp_dry(:,:,k)*theta_v(:,:)*(grad_exner(:,:,1)+grad_kappa_term(:,:,1))
        1197           0 :              pgf_term(:,:,2) = cp_dry(:,:,k)*theta_v(:,:)*(grad_exner(:,:,2)+grad_kappa_term(:,:,2))
        1198             :            end if
        1199             :            ! balanced ref profile correction:
        1200             :            ! reference temperature profile (Simmons and Jiabin, 1991, QJRMS, Section 2a)
        1201             :            !
        1202             :            !  Tref = T0+T1*Exner
        1203             :            !  T1 = .0065*Tref*Cp/g ! = ~191
        1204             :            !  T0 = Tref-T1         ! = ~97
        1205             :            !
        1206  7246746000 :            T1 = lapse_rate*Tref*cpair*rga
        1207  7246746000 :            T0 = Tref-T1
        1208  7246746000 :            if (hvcoord%hybm(k)>0) then
        1209             :              !only apply away from constant pressure levels
        1210 81818100000 :              call gradient_sphere(log(exner(:,:)),deriv,elem(ie)%Dinv,grad_logexner)
        1211             :              pgf_term(:,:,1)=pgf_term(:,:,1) + &
        1212 81818100000 :                   cpair*T0*(grad_logexner(:,:,1)-grad_exner(:,:,1)/exner(:,:))
        1213             :              pgf_term(:,:,2)=pgf_term(:,:,2) + &
        1214 81818100000 :                   cpair*T0*(grad_logexner(:,:,2)-grad_exner(:,:,2)/exner(:,:))
        1215             :            end if
        1216           0 :          elseif (pgf_formulation==2.or.pgf_formulation==3) then
        1217           0 :            pgf_term(:,:,1)  = density_inv(:,:)*grad_p_full(:,:,1,k)
        1218           0 :            pgf_term(:,:,2)  = density_inv(:,:)*grad_p_full(:,:,2,k)
        1219             :          else
        1220           0 :            call endrun('ERROR: bad choice of pgf_formulation (must be 1, 2, or 3)')
        1221             :          end if
        1222             :
        1223 36311652000 :          do j=1,np
        1224 >15218*10^7 :            do i=1,np
        1225 >11594*10^7 :              glnps1 = pgf_term(i,j,1)
        1226 >11594*10^7 :              glnps2 = pgf_term(i,j,2)
        1227 >11594*10^7 :              v1     = elem(ie)%state%v(i,j,1,k,n0)
        1228 >11594*10^7 :              v2     = elem(ie)%state%v(i,j,2,k,n0)
        1229             :
        1230             :              vtens1(i,j,k) =   &
        1231             :                   + v2*(elem(ie)%fcor(i,j) + vort(i,j,k))        &
        1232 >11594*10^7 :                   - vtemp(i,j,1) - glnps1
        1233             :
        1234             :              vtens2(i,j,k) =   &
        1235             :                   - v1*(elem(ie)%fcor(i,j) + vort(i,j,k))        &
        1236 >11594*10^7 :                   - vtemp(i,j,2) - glnps2
        1237             :              ttens(i,j,k)  =  - vgrad_T(i,j) + &
        1238 >14493*10^7 :                   density_inv(i,j)*omega_full(i,j,k)*inv_cp_full(i,j,k,ie)
        1239             :            end do
        1240             :          end do
        1241             :
        1242             :        end do vertloop
        1243             :
        1244             :        ! =========================================================
        1245             :        ! local element timestep, store in np1.
        1246             :        ! note that we allow np1=n0 or nm1
        1247             :        ! apply mass matrix
        1248             :        ! =========================================================
        1249             : #if (defined COLUMN_OPENMP)
        1250             : !$omp parallel do num_threads(vert_num_threads) private(k)
        1251             : #endif
        1252  7324668000 :        do k=1,nlev
        1253             :          !OMP_COLLAPSE_SIMD
        1254             :          !DIR_VECTOR_ALIGNED
        1255 36233730000 :          do j=1,np
        1256 >15218*10^7 :            do i=1,np
        1257 >11594*10^7 :              elem(ie)%state%v(i,j,1,k,np1) = elem(ie)%spheremp(i,j)*( elem(ie)%state%v(i,j,1,k,nm1) + dt2*vtens1(i,j,k) )
        1258 >11594*10^7 :              elem(ie)%state%v(i,j,2,k,np1) = elem(ie)%spheremp(i,j)*( elem(ie)%state%v(i,j,2,k,nm1) + dt2*vtens2(i,j,k) )
        1259 >11594*10^7 :              elem(ie)%state%T(i,j,k,np1) = elem(ie)%spheremp(i,j)*(elem(ie)%state%T(i,j,k,nm1) + dt2*ttens(i,j,k))
        1260             :              elem(ie)%state%dp3d(i,j,k,np1) = &
        1261             :                   elem(ie)%spheremp(i,j) * (elem(ie)%state%dp3d(i,j,k,nm1) - &
        1262 >14493*10^7 :                   dt2 * (divdp_dry(i,j,k)))
        1263             :            enddo
        1264             :          enddo
        1265             :
        1266             :
        1267  7324668000 :          if (use_cslam.and.eta_ave_w.ne.0._r8) then
        1268             :            !OMP_COLLAPSE_SIMD
        1269             :            !DIR_VECTOR_ALIGNED
        1270 14493492000 :            do j=1,np
        1271 60872666400 :              do i=1,np
        1272 46379174400 :                v(i,j,1) =  elem(ie)%Dinv(i,j,1,1)*vdp_dry(i,j,1,k) + elem(ie)%Dinv(i,j,1,2)*vdp_dry(i,j,2,k)
        1273 57973968000 :                v(i,j,2) =  elem(ie)%Dinv(i,j,2,1)*vdp_dry(i,j,1,k) + elem(ie)%Dinv(i,j,2,2)*vdp_dry(i,j,2,k)
        1274             :              enddo
        1275             :            enddo
        1276  2898698400 :            call subcell_div_fluxes(v, np, nc, elem(ie)%metdet,tempflux)
        1277 >15363*10^7 :            elem(ie)%sub_elem_mass_flux(:,:,:,k) = elem(ie)%sub_elem_mass_flux(:,:,:,k) - eta_ave_w*tempflux
        1278             :          end if
        1279             :        enddo
        1280             :        ! =========================================================
        1281             :        !
        1282             :        ! Pack
        1283             :        !
        1284             :        ! =========================================================
        1285    77922000 :        kptr=0
        1286    77922000 :        call edgeVpack(edge3, elem(ie)%state%T(:,:,:,np1),nlev,kptr,ie)
        1287             :
        1288    77922000 :        kptr=nlev
        1289    77922000 :        call edgeVpack(edge3, elem(ie)%state%v(:,:,:,:,np1),2*nlev,kptr,ie)
        1290             :
        1291    77922000 :        kptr=kptr+2*nlev
        1292    89004240 :        call edgeVpack(edge3, elem(ie)%state%dp3d(:,:,:,np1),nlev,kptr, ie)
        1293             :      end do
        1294             :
        1295             :      ! =============================================================
        1296             :      ! Insert communications here: for shared memory, just a single
        1297             :      ! sync is required
        1298             :      ! =============================================================
        1299    11082240 :      call bndry_exchange(hybrid,edge3,location='edge3')
        1300    89004240 :      do ie=nets,nete
        1301             :        ! ===========================================================
        1302             :        ! Unpack the edges for vgrad_T and v tendencies...
        1303             :        ! ===========================================================
        1304    77922000 :        kptr=0
        1305    77922000 :        call edgeVunpack(edge3, elem(ie)%state%T(:,:,:,np1), nlev, kptr, ie)
        1306             :
        1307    77922000 :        kptr=nlev
        1308    77922000 :        call edgeVunpack(edge3, elem(ie)%state%v(:,:,:,:,np1), 2*nlev, kptr, ie)
        1309             :
        1310    77922000 :        if (use_cslam.and.eta_ave_w.ne.0._r8) then
        1311  2929867200 :          do k=1,nlev
        1312 60903835200 :            stashdp3d(:,:,k) = elem(ie)%state%dp3d(:,:,k,np1)/elem(ie)%spheremp(:,:)
        1313             :          end do
        1314             :        endif
        1315             :
        1316    77922000 :        corners = 0.0_r8
        1317 >15225*10^7 :        corners(1:np,1:np,:) = elem(ie)%state%dp3d(:,:,:,np1)
        1318    77922000 :        kptr=kptr+2*nlev
        1319    77922000 :        call edgeVunpack(edge3, elem(ie)%state%dp3d(:,:,:,np1),nlev,kptr,ie)
        1320             :
        1321    77922000 :        if  (use_cslam.and.eta_ave_w.ne.0._r8) then
        1322    31168800 :          desc = elem(ie)%desc
        1323             :
        1324    31168800 :          call edgeDGVunpack(edge3, corners, nlev, kptr, ie)
        1325             :
        1326 >12467*10^7 :          corners = corners/dt2
        1327             :
        1328  2929867200 :          do k=1,nlev
        1329 60872666400 :            tempdp3d = elem(ie)%rspheremp(:,:)*elem(ie)%state%dp3d(:,:,k,np1)
        1330 60872666400 :            tempdp3d = tempdp3d - stashdp3d(:,:,k)
        1331 60872666400 :            tempdp3d = tempdp3d/dt2
        1332             :
        1333  2898698400 :            call distribute_flux_at_corners(cflux, corners(:,:,k), desc%getmapP)
        1334             :
        1335  8696095200 :            cflux(1,1,:)   = elem(ie)%rspheremp(1,  1) * cflux(1,1,:)
        1336  8696095200 :            cflux(2,1,:)   = elem(ie)%rspheremp(np, 1) * cflux(2,1,:)
        1337  8696095200 :            cflux(1,2,:)   = elem(ie)%rspheremp(1, np) * cflux(1,2,:)
        1338  8696095200 :            cflux(2,2,:)   = elem(ie)%rspheremp(np,np) * cflux(2,2,:)
        1339             :
        1340  2898698400 :            call subcell_dss_fluxes(tempdp3d, np, nc, elem(ie)%metdet, cflux,tempflux)
        1341 >15366*10^7 :            elem(ie)%sub_elem_mass_flux(:,:,:,k) = elem(ie)%sub_elem_mass_flux(:,:,:,k) + eta_ave_w*tempflux
        1342             :          end do
        1343             :        end if
        1344             :
        1345             :        ! ====================================================
        1346             :        ! Scale tendencies by inverse mass matrix
        1347             :        ! ====================================================
        1348             :
        1349             : #if (defined COLUMN_OPENMP)
        1350             : !$omp parallel do num_threads(vert_num_threads) private(k)
        1351             : #endif
        1352  7324668000 :        do k=1,nlev
        1353             :          !OMP_COLLAPSE_SIMD
        1354             :          !DIR_VECTOR_ALIGNED
        1355 36311652000 :          do j=1,np
        1356 >15218*10^7 :          do i=1,np
        1357 >11594*10^7 :              elem(ie)%state%T(i,j,k,np1)   = elem(ie)%rspheremp(i,j)*elem(ie)%state%T(i,j,k,np1)
        1358 >11594*10^7 :              elem(ie)%state%v(i,j,1,k,np1) = elem(ie)%rspheremp(i,j)*elem(ie)%state%v(i,j,1,k,np1)
        1359 >14493*10^7 :              elem(ie)%state%v(i,j,2,k,np1) = elem(ie)%rspheremp(i,j)*elem(ie)%state%v(i,j,2,k,np1)
        1360             :          enddo
        1361             :          enddo
        1362             :        end do
        1363             :
        1364             :        ! vertically lagrangian: complete dp3d timestep:
        1365  7335750240 :        do k=1,nlev
        1366 >15225*10^7 :          elem(ie)%state%dp3d(:,:,k,np1)= elem(ie)%rspheremp(:,:)*elem(ie)%state%dp3d(:,:,k,np1)
        1367             :        enddo
        1368             :      end do
        1369             :
        1370    11082240 :      call t_stopf('compute_and_apply_rhs')
        1371    11082240 :      call t_adj_detailf(-1)
        1372    22164480 :    end subroutine compute_and_apply_rhs
        1373             :
        1374             :
        1375             :    !
        1376             :    ! corner fluxes for CSLAM
        1377             :    !
        1378  7433758800 :    subroutine distribute_flux_at_corners(cflux, corners, getmapP)
        1379    11082240 :      use dimensions_mod, only : np, max_corner_elem
        1380             :      use control_mod,    only : swest
        1381             :
        1382             :      real(r8), intent(out) :: cflux(2,2,2)
        1383             :      real(r8), intent(in)  :: corners(0:np+1,0:np+1)
        1384             :      integer,  intent(in)  :: getmapP(:)
        1385             :
        1386  7433758800 :      cflux = 0.0_r8
        1387  7433758800 :      if (getmapP(swest+0*max_corner_elem) /= -1) then
        1388  7425499068 :        cflux(1,1,1) =                (corners(0,1) - corners(1,1))
        1389  7425499068 :        cflux(1,1,1) = cflux(1,1,1) + (corners(0,0) - corners(1,1)) / 2.0_r8
        1390  7425499068 :        cflux(1,1,1) = cflux(1,1,1) + (corners(0,1) - corners(1,0)) / 2.0_r8
        1391             :
        1392  7425499068 :        cflux(1,1,2) =                (corners(1,0) - corners(1,1))
        1393  7425499068 :        cflux(1,1,2) = cflux(1,1,2) + (corners(0,0) - corners(1,1)) / 2.0_r8
        1394  7425499068 :        cflux(1,1,2) = cflux(1,1,2) + (corners(1,0) - corners(0,1)) / 2.0_r8
        1395             :      else
        1396     8259732 :        cflux(1,1,1) =                (corners(0,1) - corners(1,1))
        1397     8259732 :        cflux(1,1,2) =                (corners(1,0) - corners(1,1))
        1398             :      endif
        1399             :
        1400  7433758800 :      if (getmapP(swest+1*max_corner_elem) /= -1) then
        1401  7425499068 :        cflux(2,1,1) =                (corners(np+1,1) - corners(np,1))
        1402  7425499068 :        cflux(2,1,1) = cflux(2,1,1) + (corners(np+1,0) - corners(np,1)) / 2.0_r8
        1403  7425499068 :        cflux(2,1,1) = cflux(2,1,1) + (corners(np+1,1) - corners(np,0)) / 2.0_r8
        1404             :
        1405  7425499068 :        cflux(2,1,2) =                (corners(np  ,0) - corners(np,  1))
        1406  7425499068 :        cflux(2,1,2) = cflux(2,1,2) + (corners(np+1,0) - corners(np,  1)) / 2.0_r8
        1407  7425499068 :        cflux(2,1,2) = cflux(2,1,2) + (corners(np  ,0) - corners(np+1,1)) / 2.0_r8
        1408             :      else
        1409     8259732 :        cflux(2,1,1) =                (corners(np+1,1) - corners(np,1))
        1410     8259732 :        cflux(2,1,2) =                (corners(np  ,0) - corners(np,1))
        1411             :      endif
        1412             :
        1413  7433758800 :      if (getmapP(swest+2*max_corner_elem) /= -1) then
        1414  7425499068 :        cflux(1,2,1) =                (corners(0,np  ) - corners(1,np  ))
        1415  7425499068 :        cflux(1,2,1) = cflux(1,2,1) + (corners(0,np+1) - corners(1,np  )) / 2.0_r8
        1416  7425499068 :        cflux(1,2,1) = cflux(1,2,1) + (corners(0,np  ) - corners(1,np+1)) / 2.0_r8
        1417             :
        1418  7425499068 :        cflux(1,2,2) =                (corners(1,np+1) - corners(1,np  ))
        1419  7425499068 :        cflux(1,2,2) = cflux(1,2,2) + (corners(0,np+1) - corners(1,np  )) / 2.0_r8
        1420  7425499068 :        cflux(1,2,2) = cflux(1,2,2) + (corners(1,np+1) - corners(0,np  )) / 2.0_r8
        1421             :      else
        1422     8259732 :        cflux(1,2,1) =                (corners(0,np  ) - corners(1,np  ))
        1423     8259732 :        cflux(1,2,2) =                (corners(1,np+1) - corners(1,np  ))
        1424             :      endif
        1425             :
        1426  7433758800 :      if (getmapP(swest+3*max_corner_elem) /= -1) then
        1427  7425499068 :        cflux(2,2,1) =                (corners(np+1,np  ) - corners(np,np  ))
        1428  7425499068 :        cflux(2,2,1) = cflux(2,2,1) + (corners(np+1,np+1) - corners(np,np  )) / 2.0_r8
        1429  7425499068 :        cflux(2,2,1) = cflux(2,2,1) + (corners(np+1,np  ) - corners(np,np+1)) / 2.0_r8
        1430             :
        1431  7425499068 :        cflux(2,2,2) =                (corners(np  ,np+1) - corners(np,np  ))
        1432  7425499068 :        cflux(2,2,2) = cflux(2,2,2) + (corners(np+1,np+1) - corners(np,np  )) / 2.0_r8
        1433  7425499068 :        cflux(2,2,2) = cflux(2,2,2) + (corners(np  ,np+1) - corners(np+1,np)) / 2.0_r8
        1434             :      else
        1435     8259732 :        cflux(2,2,1) =                (corners(np+1,np  ) - corners(np,np  ))
        1436     8259732 :        cflux(2,2,2) =                (corners(np  ,np+1) - corners(np,np  ))
        1437             :      endif
        1438  7433758800 :    end subroutine distribute_flux_at_corners
        1439             :
        1440    33248256 :   subroutine tot_energy_dyn(elem,fvm,nets,nete,tl,tl_qdp,outfld_name_suffix)
        1441             :     use dimensions_mod,         only: npsq,nlev,np,nc,use_cslam,qsize
        1442             :     use physconst,              only: rga, cpair, rearth, omega
        1443             :     use element_mod,            only: element_t
        1444             :     use cam_history,            only: outfld
        1445             :     use cam_history_support,    only: max_fieldname_len
        1446             :     use constituents,           only: cnst_get_ind
        1447             :     use string_utils,           only: strlist_get_ind
        1448             :     use hycoef,                 only: hyai, ps0
        1449             :     use fvm_control_volume_mod, only: fvm_struct
        1450             :     use cam_thermo,             only: get_dp, MASS_MIXING_RATIO,wvidx,wlidx,wiidx,seidx,keidx,moidx,mridx,ttidx,teidx, &
        1451             :                                       poidx,thermo_budget_num_vars,thermo_budget_vars
        1452             :     use cam_thermo,             only: get_hydrostatic_energy
        1453             :     use air_composition,        only: thermodynamic_active_species_idx_dycore, get_cp
        1454             :     use air_composition,        only: thermodynamic_active_species_num,    thermodynamic_active_species_idx_dycore
        1455             :     use air_composition,        only: thermodynamic_active_species_liq_num,thermodynamic_active_species_liq_idx
        1456             :     use air_composition,        only: thermodynamic_active_species_ice_num,thermodynamic_active_species_ice_idx
        1457             :     use dimensions_mod,         only: cnst_name_gll
        1458             :     use dyn_tests_utils,        only: vcoord=>vc_dry_pressure
        1459             :     use cam_budget,             only: thermo_budget_history
        1460             :     !------------------------------Arguments--------------------------------
        1461             :
        1462             :     type (element_t) , intent(inout) :: elem(:)
        1463             :     type(fvm_struct) , intent(inout) :: fvm(:)
        1464             :     integer          , intent(in) :: tl, tl_qdp,nets,nete
        1465             :     character*(*)    , intent(in) :: outfld_name_suffix ! suffix for "outfld" names
        1466             :
        1467             :     !---------------------------Local storage-------------------------------
        1468             :
        1469             :     real(kind=r8) :: se(np,np)                       ! Enthalpy energy (J/m2)
        1470             :     real(kind=r8) :: ke(np,np)                       ! kinetic energy    (J/m2)
        1471             :     real(kind=r8) :: po(np,np)                       ! PHIS term in energy equation   (J/m2)
        1472             :     real(kind=r8) :: wv(np,np)                       ! water vapor
        1473             :     real(kind=r8) :: liq(np,np)                      ! liquid
        1474             :     real(kind=r8) :: ice(np,np)                      ! ice
        1475             :
        1476    66496512 :     real(kind=r8) :: q(np,nlev,qsize)
        1477    66496512 :     integer       :: qidx(thermodynamic_active_species_num)
        1478             :     real(kind=r8) :: cdp_fvm(nc,nc,nlev)
        1479             :     real(kind=r8) :: cdp(np,np,nlev)
        1480             :     real(kind=r8) :: ptop(np,np)
        1481             :     real(kind=r8) :: pdel(np,np,nlev)
        1482             :     real(kind=r8) :: cp(np,np,nlev)
        1483             :
        1484             :     !
        1485             :     ! global axial angular momentum (AAM) can be separated into one part (mr) associatedwith the relative motion
        1486             :     ! of the atmosphere with respect to the planets surface (also known as wind AAM) and another part (mo)
        1487             :     ! associated with the angular velocity OMEGA (2*pi/d, where d is the length of the day) of the planet
        1488             :     ! (also known as mass AAM)
        1489             :     !
        1490             :     real(kind=r8) :: mr(npsq)  ! wind AAM
        1491             :     real(kind=r8) :: mo(npsq)  ! mass AAM
        1492             :     real(kind=r8) :: mr_cnst, mo_cnst, cos_lat, mr_tmp, mo_tmp
        1493             :
        1494             :     integer :: ie,i,j,k,m_cnst,nq,idx
        1495             :     integer :: ixwv,ixcldice, ixcldliq, ixtt ! CLDICE, CLDLIQ and test tracer indices
        1496             :     character(len=max_fieldname_len) :: name_out(thermo_budget_num_vars)
        1497             :
        1498             :     !-----------------------------------------------------------------------
        1499             :
        1500    33248256 :     if (thermo_budget_history) then
        1501           0 :     do i=1,thermo_budget_num_vars
        1502           0 :        name_out(i)=trim(thermo_budget_vars(i))//'_'//trim(outfld_name_suffix)
        1503             :     end do
        1504             :
        1505           0 :       if (use_cslam) then
        1506           0 :         ixwv = 1
        1507           0 :         call cnst_get_ind('CLDLIQ' , ixcldliq, abort=.false.)
        1508           0 :         call cnst_get_ind('CLDICE' , ixcldice, abort=.false.)
        1509             :       else
        1510             :         !
        1511             :         ! when using CSLAM the condensates on the GLL grid may be located in a different index than in physics
        1512             :         !
        1513           0 :         ixwv = -1
        1514           0 :         call strlist_get_ind(cnst_name_gll, 'CLDLIQ' , ixcldliq, abort=.false.)
        1515           0 :         call strlist_get_ind(cnst_name_gll, 'CLDICE' , ixcldice, abort=.false.)
        1516             :       end if
        1517           0 :       call cnst_get_ind('TT_LW' , ixtt    , abort=.false.)
        1518             :       !
        1519             :       ! Compute frozen static energy in 3 parts:  KE, SE, and energy associated with vapor and liquid
        1520             :       !
        1521           0 :       do nq=1,thermodynamic_active_species_num
        1522           0 :         qidx(nq) = nq
        1523             :       end do
        1524           0 :       do ie=nets,nete
        1525           0 :         call get_cp(elem(ie)%state%Qdp(:,:,:,1:qsize,tl_qdp),&
        1526           0 :              .false., cp, factor=1.0_r8/elem(ie)%state%dp3d(:,:,:,tl),&
        1527           0 :              active_species_idx_dycore=thermodynamic_active_species_idx_dycore)
        1528           0 :         ptop = hyai(1)*ps0
        1529           0 :         do j=1,np
        1530             :           !get mixing ratio of thermodynamic active species only
        1531             :           !(other tracers not used in get_hydrostatic_energy)
        1532           0 :           do nq=1,thermodynamic_active_species_num
        1533           0 :             m_cnst = thermodynamic_active_species_idx_dycore(nq)
        1534           0 :             q(:,:,m_cnst) = elem(ie)%state%Qdp(:,j,:,m_cnst,tl_qdp)/&
        1535           0 :                  elem(ie)%state%dp3d(:,j,:,tl)
        1536             :           end do
        1537             :           call get_hydrostatic_energy(q, &
        1538           0 :                .false., elem(ie)%state%dp3d(:,j,:,tl), cp(:,j,:), elem(ie)%state%v(:,j,1,:,tl), &
        1539             :                elem(ie)%state%v(:,j,2,:,tl), elem(ie)%state%T(:,j,:,tl), vcoord, ptop=ptop(:,j),&
        1540             :                phis=elem(ie)%state%phis(:,j), dycore_idx=.true.,                                &
        1541           0 :                se=se(:,j), po=po(:,j), ke=ke(:,j), wv=wv(:,j), liq=liq(:,j), ice=ice(:,j))
        1542             :         end do
        1543             :         !
        1544             :         ! Output energy diagnostics on GLL grid
        1545             :         !
        1546           0 :         call outfld(name_out(poidx)  ,po       ,npsq,ie)
        1547           0 :         call outfld(name_out(seidx)  ,se       ,npsq,ie)
        1548           0 :         call outfld(name_out(keidx)  ,ke       ,npsq,ie)
        1549           0 :         call outfld(name_out(teidx)  ,ke+se+po ,npsq,ie)
        1550             :         !
        1551             :         ! mass variables are output on CSLAM grid if using CSLAM else GLL grid
        1552             :         !
        1553           0 :         if (use_cslam) then
        1554           0 :            if (ixwv>0) then
        1555           0 :               cdp_fvm = fvm(ie)%c(1:nc,1:nc,:,ixwv)*fvm(ie)%dp_fvm(1:nc,1:nc,:)
        1556           0 :               call util_function(cdp_fvm,nc,nlev,name_out(wvidx),ie)
        1557             :            end if
        1558             :            !
        1559             :            ! sum over liquid water
        1560             :            !
        1561           0 :            if (thermodynamic_active_species_liq_num>0) then
        1562           0 :               cdp_fvm = 0.0_r8
        1563           0 :               do nq = 1,thermodynamic_active_species_liq_num
        1564           0 :                 cdp_fvm = cdp_fvm + fvm(ie)%c(1:nc,1:nc,:,thermodynamic_active_species_liq_idx(nq))&
        1565           0 :                      *fvm(ie)%dp_fvm(1:nc,1:nc,:)
        1566             :               end do
        1567           0 :               call util_function(cdp_fvm,nc,nlev,name_out(wlidx),ie)
        1568             :            end if
        1569             :            !
        1570             :            ! sum over ice water
        1571             :            !
        1572           0 :            if (thermodynamic_active_species_ice_num>0) then
        1573           0 :              cdp_fvm = 0.0_r8
        1574           0 :              do nq = 1,thermodynamic_active_species_ice_num
        1575           0 :                cdp_fvm = cdp_fvm + fvm(ie)%c(1:nc,1:nc,:,thermodynamic_active_species_ice_idx(nq))&
        1576           0 :                    *fvm(ie)%dp_fvm(1:nc,1:nc,:)
        1577             :              end do
        1578           0 :              call util_function(cdp_fvm,nc,nlev,name_out(wiidx),ie)
        1579             :            end if
        1580           0 :            if (ixtt>0) then
        1581           0 :               cdp_fvm = fvm(ie)%c(1:nc,1:nc,:,ixtt)*fvm(ie)%dp_fvm(1:nc,1:nc,:)
        1582           0 :               call util_function(cdp_fvm,nc,nlev,name_out(ttidx),ie)
        1583             :            end if
        1584             :         else
        1585           0 :            cdp = elem(ie)%state%qdp(:,:,:,1,tl_qdp)
        1586           0 :            call util_function(cdp,np,nlev,name_out(wvidx),ie)
        1587             :            !
        1588             :            ! sum over liquid water
        1589             :            !
        1590           0 :            if (thermodynamic_active_species_liq_num>0) then
        1591           0 :               cdp = 0.0_r8
        1592           0 :               do idx = 1,thermodynamic_active_species_liq_num
        1593           0 :                  cdp = cdp + elem(ie)%state%qdp(:,:,:,thermodynamic_active_species_liq_idx(idx),tl_qdp)
        1594             :               end do
        1595           0 :               call util_function(cdp,np,nlev,name_out(wlidx),ie)
        1596             :            end if
        1597             :            !
        1598             :            ! sum over ice water
        1599             :            !
        1600           0 :            if (thermodynamic_active_species_ice_num>0) then
        1601           0 :               cdp = 0.0_r8
        1602           0 :               do idx = 1,thermodynamic_active_species_ice_num
        1603           0 :                  cdp = cdp + elem(ie)%state%qdp(:,:,:,thermodynamic_active_species_ice_idx(idx),tl_qdp)
        1604             :               end do
        1605           0 :               call util_function(cdp,np,nlev,name_out(wiidx),ie)
        1606             :            end if
        1607           0 :            if (ixtt>0) then
        1608           0 :               cdp = elem(ie)%state%qdp(:,:,:,ixtt    ,tl_qdp)
        1609           0 :               call util_function(cdp,np,nlev,name_out(ttidx),ie)
        1610             :            end if
        1611             :         end if
        1612             :      end do
        1613             :   !
        1614             :   ! Axial angular momentum diagnostics
        1615             :   !
        1616             :   ! Code follows
        1617             :   !
        1618             :   ! Lauritzen et al., (2014): Held-Suarez simulations with the Community Atmosphere Model
        1619             :     ! Spectral Element (CAM-SE) dynamical core: A global axial angularmomentum analysis using Eulerian
        1620             :     ! and floating Lagrangian vertical coordinates. J. Adv. Model. Earth Syst. 6,129-140,
        1621             :     ! doi:10.1002/2013MS000268
        1622             :     !
        1623             :     ! MR is equation (6) without \Delta A and sum over areas (areas are in units of radians**2)
        1624             :     ! MO is equation (7) without \Delta A and sum over areas (areas are in units of radians**2)
        1625             :     !
        1626             :
        1627           0 :       call strlist_get_ind(cnst_name_gll, 'CLDLIQ', ixcldliq, abort=.false.)
        1628           0 :       call strlist_get_ind(cnst_name_gll, 'CLDICE', ixcldice, abort=.false.)
        1629           0 :       mr_cnst = rga*rearth**3
        1630           0 :       mo_cnst = rga*omega*rearth**4
        1631           0 :       do ie=nets,nete
        1632           0 :         mr    = 0.0_r8
        1633           0 :         mo    = 0.0_r8
        1634           0 :         call get_dp(elem(ie)%state%Qdp(:,:,:,1:qsize,tl_qdp), MASS_MIXING_RATIO, thermodynamic_active_species_idx_dycore,&
        1635           0 :              elem(ie)%state%dp3d(:,:,:,tl), pdel)
        1636           0 :         do k = 1, nlev
        1637           0 :           do j=1,np
        1638           0 :             do i = 1, np
        1639           0 :               cos_lat = cos(elem(ie)%spherep(i,j)%lat)
        1640           0 :               mr_tmp   = mr_cnst*elem(ie)%state%v(i,j,1,k,tl)*pdel(i,j,k)*cos_lat
        1641           0 :               mo_tmp   = mo_cnst*pdel(i,j,k)*cos_lat**2
        1642             :
        1643           0 :               mr   (i+(j-1)*np) = mr   (i+(j-1)*np) + mr_tmp
        1644           0 :               mo   (i+(j-1)*np) = mo   (i+(j-1)*np) + mo_tmp
        1645             :             end do
        1646             :           end do
        1647             :         end do
        1648           0 :         call outfld(name_out(mridx)  ,mr       ,npsq,ie)
        1649           0 :         call outfld(name_out(moidx)  ,mo       ,npsq,ie)
        1650             :       end do
        1651             :    endif ! if thermo budget history
        1652             :
        1653    33248256 :   end subroutine tot_energy_dyn
        1654             :
        1655             :
        1656     1477632 :   subroutine output_qdp_var_dynamics(qdp,nx,num_trac,nets,nete,outfld_name)
        1657    33248256 :     use dimensions_mod, only: nlev
        1658             :     use cam_history   , only: hist_fld_active
        1659             :     use constituents  , only: cnst_get_ind
        1660             :     !------------------------------Arguments--------------------------------
        1661             :
        1662             :     integer      ,intent(in) :: nx,num_trac,nets,nete
        1663             :     real(kind=r8) :: qdp(nx,nx,nlev,num_trac,nets:nete)
        1664             :     character*(*),intent(in) :: outfld_name
        1665             :
        1666             :     !---------------------------Local storage-------------------------------
        1667             :
        1668             :     integer :: ie
        1669             :     integer :: ixcldice, ixcldliq, ixtt
        1670             :     character(len=16) :: name_out1,name_out2,name_out3,name_out4
        1671             :     !-----------------------------------------------------------------------
        1672             :
        1673      738816 :     name_out1 = 'WV_'   //trim(outfld_name)
        1674      738816 :     name_out2 = 'WI_'   //trim(outfld_name)
        1675      738816 :     name_out3 = 'WL_'   //trim(outfld_name)
        1676      738816 :     name_out4 = 'TT_'   //trim(outfld_name)
        1677             :
        1678      738816 :     if ( hist_fld_active(name_out1).or.hist_fld_active(name_out2).or.hist_fld_active(name_out3).or.&
        1679             :          hist_fld_active(name_out4)) then
        1680             :
        1681           0 :       call cnst_get_ind('CLDLIQ', ixcldliq, abort=.false.)
        1682           0 :       call cnst_get_ind('CLDICE', ixcldice, abort=.false.)
        1683           0 :       call cnst_get_ind('TT_LW' , ixtt    , abort=.false.)
        1684             :
        1685           0 :       do ie=nets,nete
        1686           0 :         call util_function(qdp(:,:,:,1,ie),nx,nlev,name_out1,ie)
        1687           0 :         if (ixcldice>0) call util_function(qdp(:,:,:,ixcldice,ie),nx,nlev,name_out2,ie)
        1688           0 :         if (ixcldliq>0) call util_function(qdp(:,:,:,ixcldliq,ie),nx,nlev,name_out3,ie)
        1689           0 :         if (ixtt>0    ) call util_function(qdp(:,:,:,ixtt    ,ie),nx,nlev,name_out4,ie)
        1690             :       end do
        1691             :     end if
        1692      738816 :   end subroutine output_qdp_var_dynamics
        1693             :
        1694             :   !
        1695             :   ! column integrate mass-variable and outfld
        1696             :   !
        1697           0 :   subroutine util_function(f_in,nx,nz,name_out,ie)
        1698      738816 :     use physconst,   only: rga
        1699             :     use cam_history, only: outfld, hist_fld_active
        1700             :     integer,           intent(in) :: nx,nz,ie
        1701             :     real(kind=r8),     intent(in) :: f_in(nx,nx,nz)
        1702             :     character(len=16), intent(in) :: name_out
        1703           0 :     real(kind=r8)       :: f_out(nx*nx)
        1704             :     integer             :: i,j,k
        1705           0 :     if (hist_fld_active(name_out)) then
        1706           0 :       f_out = 0.0_r8
        1707           0 :       do k = 1, nz
        1708           0 :         do j = 1, nx
        1709           0 :           do i = 1, nx
        1710           0 :             f_out(i+(j-1)*nx) = f_out(i+(j-1)*nx) + f_in(i,j,k)
        1711             :           end do
        1712             :         end do
        1713             :       end do
        1714           0 :       f_out = f_out*rga
        1715           0 :       call outfld(name_out,f_out,nx*nx,ie)
        1716             :     end if
        1717           0 :   end subroutine util_function
        1718             :
        1719      370944 :    subroutine compute_omega(hybrid,n0,qn0,elem,deriv,nets,nete,dt,hvcoord)
        1720           0 :      use control_mod,    only: nu_p, hypervis_subcycle
        1721             :      use dimensions_mod, only: np, nlev, qsize
        1722             :      use hybrid_mod,     only: hybrid_t
        1723             :      use element_mod,    only: element_t
        1724             :      use derivative_mod, only: divergence_sphere, derivative_t,gradient_sphere
        1725             :      use hybvcoord_mod,  only: hvcoord_t
        1726             :      use edge_mod,       only: edgevpack, edgevunpack
        1727             :      use bndry_mod,      only: bndry_exchange
        1728             :      use viscosity_mod,  only: biharmonic_wk_omega
        1729             :      use cam_thermo,     only: get_dp, MASS_MIXING_RATIO
        1730             :      use air_composition,only: thermodynamic_active_species_idx_dycore
        1731             :      implicit none
        1732             :      type (hybrid_t)      , intent(in)            :: hybrid
        1733             :      type (element_t)     , intent(inout), target :: elem(:)
        1734             :      type (derivative_t)  , intent(in)            :: deriv
        1735             :      integer              , intent(in)            :: nets,nete,n0,qn0
        1736             :      real (kind=r8)       , intent(in)            :: dt
        1737             :      type (hvcoord_t)     , intent(in)            :: hvcoord
        1738             :
        1739             :      integer        :: i,j,k,ie,kptr,ic
        1740             :      real (kind=r8) :: ckk, suml(np,np), v1, v2, term
        1741             :      real (kind=r8) :: dp_full(np,np,nlev)
        1742             :      real (kind=r8) :: p_full(np,np,nlev),grad_p_full(np,np,2),vgrad_p_full(np,np,nlev)
        1743             :      real (kind=r8) :: divdp_full(np,np,nlev),vdp_full(np,np,2)
        1744      741888 :      real(kind=r8)  :: Otens(np,np  ,nlev,nets:nete), dt_hyper
        1745             :
        1746             :      logical, parameter  :: del4omega = .true.
        1747             :
        1748     2979144 :      do ie=nets,nete
        1749     5216400 :         call get_dp(elem(ie)%state%Qdp(:,:,:,1:qsize,qn0), MASS_MIXING_RATIO,&
        1750     7824600 :            thermodynamic_active_species_idx_dycore, elem(ie)%state%dp3d(:,:,:,n0), dp_full)
        1751   245170800 :         do k=1,nlev
        1752   242562600 :            if (k==1) then
        1753    54772200 :               p_full(:,:,k) = hvcoord%hyai(k)*hvcoord%ps0 + dp_full(:,:,k)/2
        1754             :            else
        1755  5039042400 :               p_full(:,:,k)=p_full(:,:,k-1) + dp_full(:,:,k-1)/2 + dp_full(:,:,k)/2
        1756             :            endif
        1757   242562600 :            call gradient_sphere(p_full(:,:,k),deriv,elem(ie)%Dinv,grad_p_full (:,:,:))
        1758  1212813000 :          do j=1,np
        1759  5093814600 :            do i=1,np
        1760  3881001600 :              v1 = elem(ie)%state%v(i,j,1,k,n0)
        1761  3881001600 :              v2 = elem(ie)%state%v(i,j,2,k,n0)
        1762  3881001600 :              vdp_full(i,j,1) = dp_full(i,j,k)*v1
        1763  3881001600 :              vdp_full(i,j,2) = dp_full(i,j,k)*v2
        1764  4851252000 :              vgrad_p_full(i,j,k) = (v1*grad_p_full(i,j,1) + v2*grad_p_full(i,j,2))
        1765             :            end do
        1766             :          end do
        1767   245170800 :          call divergence_sphere(vdp_full(:,:,:),deriv,elem(ie),divdp_full(:,:,k))
        1768             :        end do
        1769     2608200 :        ckk       = 0.5_r8
        1770     2608200 :        suml(:,:  ) = 0
        1771   245541744 :        do k=1,nlev
        1772  1215421200 :          do j=1,np   !   Loop inversion (AAM)
        1773  5093814600 :            do i=1,np
        1774  3881001600 :              term         = -divdp_full(i,j,k)
        1775             :
        1776  3881001600 :              v1 = elem(ie)%state%v(i,j,1,k,n0)
        1777  3881001600 :              v2 = elem(ie)%state%v(i,j,2,k,n0)
        1778             :
        1779  3881001600 :              elem(ie)%derived%omega(i,j,k) = suml(i,j) + ckk*term+vgrad_p_full(i,j,k)
        1780             :
        1781  4851252000 :              suml(i,j)    = suml(i,j)   + term
        1782             :            end do
        1783             :          end do
        1784             :        end do
        1785             :      end do
        1786     2979144 :      do ie=nets,nete
        1787   245170800 :        do k=1,nlev
        1788  5096422800 :          elem(ie)%derived%omega(:,:,k) = elem(ie)%spheremp(:,:)*elem(ie)%derived%omega(:,:,k)
        1789             :        end do
        1790     2608200 :        kptr=0
        1791     2979144 :        call edgeVpack(edgeOmega, elem(ie)%derived%omega(:,:,:),nlev,kptr, ie)
        1792             :      end do
        1793      370944 :      call bndry_exchange(hybrid,edgeOmega,location='compute_omega #1')
        1794     2979144 :      do ie=nets,nete
        1795     2608200 :        kptr=0
        1796     2608200 :        call edgeVunpack(edgeOmega, elem(ie)%derived%omega(:,:,:),nlev,kptr, ie)
        1797   245541744 :        do k=1,nlev
        1798  5096422800 :          elem(ie)%derived%omega(:,:,k) = elem(ie)%rspheremp(:,:)*elem(ie)%derived%omega(:,:,k)
        1799             :        end do
        1800             :      end do
        1801             :
        1802             :      if  (del4omega) then
        1803      370944 :        dt_hyper=dt/hypervis_subcycle
        1804     1483776 :        do ic=1,hypervis_subcycle
        1805     8937432 :          do ie=nets,nete
        1806 15290381232 :            Otens(:,:,:,ie) = elem(ie)%derived%omega(:,:,:)
        1807             :          end do
        1808     1112832 :          call biharmonic_wk_omega(elem,Otens,deriv,edgeOmega,hybrid,nets,nete,1,nlev)
        1809     8937432 :          do ie=nets,nete
        1810   735512400 :            do k=1,nlev
        1811 15289268400 :              Otens(:,:,k,ie) = -dt_hyper*nu_p*Otens(:,:,k,ie)
        1812             :            end do
        1813     7824600 :            kptr=0
        1814     8937432 :            call edgeVpack(edgeOmega,Otens(:,:,:,ie) ,nlev,kptr, ie)
        1815             :          end do
        1816     1112832 :          call bndry_exchange(hybrid,edgeOmega,location='compute_omega #2')
        1817     8937432 :          do ie=nets,nete
        1818     7824600 :            kptr=0
        1819     8937432 :            call edgeVunpack(edgeOmega, Otens(:,:,:,ie),nlev,kptr, ie)
        1820             :          end do
        1821     9308376 :          do ie=nets,nete
        1822   736625232 :            do k=1,nlev
        1823  1455375600 :              elem(ie)%derived%omega(:,:,k) =elem(ie)%derived%omega(:,:,k)+&
        1824 16744644000 :                   elem(ie)%rspheremp(:,:)*Otens(:,:,k,ie)
        1825             :            end do
        1826             :          end do
        1827             :        end do
        1828             :      end if
        1829             :      !call FreeEdgeBuffer(edgeOmega)
        1830      370944 :    end subroutine compute_omega
        1831             : end module prim_advance_mod

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