DIC#

%load_ext autoreload
%autoreload 2
import xarray as xr

from dask.distributed import Client

import catalog
import util

xr.set_options(keep_attrs=True)
/glade/work/kristenk/miniconda/envs/cesm-exp/lib/python3.7/site-packages/dask_jobqueue/core.py:20: FutureWarning: tmpfile is deprecated and will be removed in a future release. Please use dask.utils.tmpfile instead.
  from distributed.utils import tmpfile
<xarray.core.options.set_options at 0x2b20a04aacd0>

Parameters#

casename = 'g.e22a06.G1850ECOIAF_JRA_PHYS_DEV.TL319_g17.scope_v1'
component = 'pop'
stream = 'h'

variable_id = 'TEMP'

cluster_scheduler_address = None
# Parameters
casename = "g.e22a06.G1850ECOIAF_JRA_PHYS_DEV.TL319_g17.scope_v1"
component = "pop"
stream = "h"
variable_id = "DIC"
cluster_scheduler_address = "tcp://10.12.206.26:40301"
assert component in ['pop']
assert stream in ['h', 'h.ecosys.nday1']

Connect to cluster#

if cluster_scheduler_address is None:
    cluster, client = util.get_ClusterClient()
    cluster.scale(12)
else:
    client = Client(cluster_scheduler_address)
client

Client

Client-dabd2776-0c3b-11ed-b489-3cecef1b11d4

Connection method: Direct
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/36768/status

Scheduler Info

Scheduler

Scheduler-59153102-2d90-4250-b1d9-5b9f28512082

Comm: tcp://10.12.206.26:40301 Workers: 32
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/36768/status Total threads: 32
Started: 9 minutes ago Total memory: 744.96 GiB

Workers

Worker: PBSCluster-0

Comm: tcp://10.12.206.25:41180 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/42193/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.25:34568
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-smli87lm
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 369.47 MiB Spilled bytes: 0 B
Read bytes: 290.06 MiB Write bytes: 32.76 MiB

Worker: PBSCluster-1

Comm: tcp://10.12.206.23:35055 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/39970/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.23:39298
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-pajhhimy
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 316.80 MiB Spilled bytes: 0 B
Read bytes: 291.26 MiB Write bytes: 18.50 MiB

Worker: PBSCluster-10

Comm: tcp://10.12.206.18:39960 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/40058/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:33787
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-frtdc9f5
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 4.0% Last seen: Just now
Memory usage: 276.34 MiB Spilled bytes: 0 B
Read bytes: 80.67 MiB Write bytes: 32.29 MiB

Worker: PBSCluster-11

Comm: tcp://10.12.206.18:35287 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/39615/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:36732
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-mmo_bs6s
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 329.20 MiB Spilled bytes: 0 B
Read bytes: 80.60 MiB Write bytes: 48.37 MiB

Worker: PBSCluster-12

Comm: tcp://10.12.206.8:33729 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/35711/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:43143
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-svc02rvq
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 387.59 MiB Spilled bytes: 0 B
Read bytes: 177.52 MiB Write bytes: 64.78 MiB

Worker: PBSCluster-13

Comm: tcp://10.12.206.8:37550 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/38907/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:40235
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-lys_uzzv
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 365.98 MiB Spilled bytes: 0 B
Read bytes: 177.46 MiB Write bytes: 64.75 MiB

Worker: PBSCluster-14

Comm: tcp://10.12.206.25:44992 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/44154/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.25:43428
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-76two5nt
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 356.17 MiB Spilled bytes: 0 B
Read bytes: 289.60 MiB Write bytes: 32.71 MiB

Worker: PBSCluster-15

Comm: tcp://10.12.206.15:43062 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/32926/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.15:39144
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-jy38onqp
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 372.23 MiB Spilled bytes: 0 B
Read bytes: 290.30 MiB Write bytes: 125.42 MiB

Worker: PBSCluster-16

Comm: tcp://10.12.206.8:43565 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/41710/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:45391
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-_7ilj7sa
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 375.43 MiB Spilled bytes: 0 B
Read bytes: 177.39 MiB Write bytes: 64.73 MiB

Worker: PBSCluster-17

Comm: tcp://10.12.206.11:40919 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/45664/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.11:40649
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-o65npiy5
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 446.84 MiB Spilled bytes: 0 B
Read bytes: 437.86 MiB Write bytes: 4.48 GiB

Worker: PBSCluster-18

Comm: tcp://10.12.206.11:33891 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/38384/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.11:33328
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-nou8aprr
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 299.07 MiB Spilled bytes: 0 B
Read bytes: 437.66 MiB Write bytes: 4.48 GiB

Worker: PBSCluster-19

Comm: tcp://10.12.206.15:36904 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/35533/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.15:34961
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-r5hakwxw
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 310.71 MiB Spilled bytes: 0 B
Read bytes: 290.33 MiB Write bytes: 125.44 MiB

Worker: PBSCluster-2

Comm: tcp://10.12.206.15:43006 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/39124/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.15:43393
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-mmk9h6y4
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 315.49 MiB Spilled bytes: 0 B
Read bytes: 274.71 MiB Write bytes: 91.26 MiB

Worker: PBSCluster-20

Comm: tcp://10.12.206.18:45916 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/35027/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:43737
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-xa8tkihj
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 381.23 MiB Spilled bytes: 0 B
Read bytes: 80.74 MiB Write bytes: 32.32 MiB

Worker: PBSCluster-21

Comm: tcp://10.12.206.11:45334 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/46680/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.11:46761
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-t02yg0d0
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 374.96 MiB Spilled bytes: 0 B
Read bytes: 432.30 MiB Write bytes: 4.47 GiB

Worker: PBSCluster-22

Comm: tcp://10.12.206.18:34993 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/44524/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:46562
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-3e1h8ye1
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 344.24 MiB Spilled bytes: 0 B
Read bytes: 80.73 MiB Write bytes: 32.32 MiB

Worker: PBSCluster-23

Comm: tcp://10.12.206.15:39733 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/46168/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.15:41249
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-xyvrzxs3
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 311.93 MiB Spilled bytes: 0 B
Read bytes: 290.31 MiB Write bytes: 125.43 MiB

Worker: PBSCluster-24

Comm: tcp://10.12.206.25:44221 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/45234/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.25:40387
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-yfm951kg
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 426.73 MiB Spilled bytes: 0 B
Read bytes: 273.97 MiB Write bytes: 32.81 MiB

Worker: PBSCluster-25

Comm: tcp://10.12.206.18:33408 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/43488/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:41022
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-6df9eo6t
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 326.22 MiB Spilled bytes: 0 B
Read bytes: 80.61 MiB Write bytes: 32.27 MiB

Worker: PBSCluster-26

Comm: tcp://10.12.206.8:38884 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/39795/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:40143
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-sb74tso9
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 374.19 MiB Spilled bytes: 0 B
Read bytes: 177.46 MiB Write bytes: 64.75 MiB

Worker: PBSCluster-27

Comm: tcp://10.12.206.15:40873 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/45934/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.15:41861
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-2tgmhfdl
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 328.22 MiB Spilled bytes: 0 B
Read bytes: 290.56 MiB Write bytes: 125.54 MiB

Worker: PBSCluster-28

Comm: tcp://10.12.206.18:36750 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/42860/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:43661
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-6lr4z8hl
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 276.31 MiB Spilled bytes: 0 B
Read bytes: 80.61 MiB Write bytes: 32.27 MiB

Worker: PBSCluster-29

Comm: tcp://10.12.206.8:32978 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/46650/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:38238
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-ihw76ltj
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 283.79 MiB Spilled bytes: 0 B
Read bytes: 177.50 MiB Write bytes: 64.77 MiB

Worker: PBSCluster-3

Comm: tcp://10.12.206.18:34352 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/35771/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.18:32780
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-l8qf3wzg
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 424.57 MiB Spilled bytes: 0 B
Read bytes: 80.52 MiB Write bytes: 32.23 MiB

Worker: PBSCluster-30

Comm: tcp://10.12.206.8:39013 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/33562/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:40233
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-peochg10
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 426.78 MiB Spilled bytes: 0 B
Read bytes: 177.52 MiB Write bytes: 64.77 MiB

Worker: PBSCluster-31

Comm: tcp://10.12.206.25:43689 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/43012/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.25:43417
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-yfzy1i0u
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 438.14 MiB Spilled bytes: 0 B
Read bytes: 289.97 MiB Write bytes: 32.75 MiB

Worker: PBSCluster-4

Comm: tcp://10.12.206.13:33058 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/43170/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.13:39266
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-yy1kkjd5
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 320.14 MiB Spilled bytes: 0 B
Read bytes: 435.30 MiB Write bytes: 97.24 MiB

Worker: PBSCluster-5

Comm: tcp://10.12.206.23:36916 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/42702/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.23:45113
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-8th_y8dw
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 377.82 MiB Spilled bytes: 0 B
Read bytes: 290.98 MiB Write bytes: 18.48 MiB

Worker: PBSCluster-6

Comm: tcp://10.12.206.8:38424 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/46679/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.8:44217
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-ml7gmjn8
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 417.76 MiB Spilled bytes: 0 B
Read bytes: 177.28 MiB Write bytes: 64.69 MiB

Worker: PBSCluster-7

Comm: tcp://10.12.206.25:44991 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/42629/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.25:45710
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-ab599zkf
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 2.0% Last seen: Just now
Memory usage: 309.57 MiB Spilled bytes: 0 B
Read bytes: 290.62 MiB Write bytes: 32.82 MiB

Worker: PBSCluster-8

Comm: tcp://10.12.206.25:42326 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/44451/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.25:35373
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-3gi9oohh
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 407.25 MiB Spilled bytes: 0 B
Read bytes: 289.94 MiB Write bytes: 32.75 MiB

Worker: PBSCluster-9

Comm: tcp://10.12.206.15:35080 Total threads: 1
Dashboard: https://jupyterhub.hpc.ucar.edu/stable/user/kristenk/proxy/46851/status Memory: 23.28 GiB
Nanny: tcp://10.12.206.15:39139
Local directory: /glade/scratch/kristenk/dask-workers/dask-worker-space/worker-9ijbos11
Tasks executing: 0 Tasks in memory: 0
Tasks ready: 0 Tasks in flight: 0
CPU usage: 0.0% Last seen: Just now
Memory usage: 331.15 MiB Spilled bytes: 0 B
Read bytes: 274.51 MiB Write bytes: 91.19 MiB

Load the data#

dsets = catalog.to_dataset_dict(
    case=casename,
    component=component,
    stream=stream,
)
dsets.keys()
dict_keys(['g.e22a06.G1850ECOIAF_JRA_PHYS_DEV.TL319_g17.scope_v1.pop.h'])

Compute long-term mean and plot#

ds = dsets[f'{casename}.{component}.{stream}']
dt_wgt = ds.time_bound.diff('d2').squeeze()
dt_wgt /= dt_wgt.sum()
dt_wgt
<xarray.DataArray 'time_bound' (time: 120)>
dask.array<truediv, shape=(120,), dtype=float64, chunksize=(1,), chunktype=numpy.ndarray>
Coordinates:
  * time     (time) object 0052-01-16 12:00:00 ... 0061-12-16 12:00:00
Attributes:
    long_name:  boundaries for time-averaging interval
    units:      days since 0000-01-01 00:00:00
ds[variable_id].weighted(dt_wgt).mean('time').isel(z_t=0).plot()
<matplotlib.collections.QuadMesh at 0x2b20dbf19ad0>
_images/ocn-tracer-views-dissolved_inorganic_carbon_14_1.png